Unix and Linux Discussions Tagged with multiple |
|
Thread / Thread Starter |
Last Post |
Replies |
Views |
Forum |
|
|
|
3 |
4,857 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
7,167 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
7,783 |
Shell Programming and Scripting |
|
|
|
6 |
2,483 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
12,772 |
Shell Programming and Scripting |
|
|
|
1 |
15,973 |
Shell Programming and Scripting |
|
|
|
2 |
2,949 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,865 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
9,698 |
Shell Programming and Scripting |
|
|
|
0 |
10,371 |
Shell Programming and Scripting |
|
|
|
6 |
3,156 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
3,518 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,236 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
5,489 |
Shell Programming and Scripting |
|
|
|
2 |
3,825 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
5,177 |
Shell Programming and Scripting |
|
|
|
2 |
4,405 |
Shell Programming and Scripting |
|
|
|
2 |
3,125 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
9,239 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
4,676 |
UNIX for Beginners Questions & Answers |
|
|
|
15 |
4,538 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
3,534 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
2,151 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,582 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
2,667 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,465 |
UNIX for Beginners Questions & Answers |
|
|
|
17 |
4,424 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
10,791 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,621 |
UNIX for Beginners Questions & Answers |
|
|
|
9 |
1,685 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
4,636 |
UNIX for Beginners Questions & Answers |
|
|
|
6 |
1,682 |
Shell Programming and Scripting |
|
|
|
1 |
6,023 |
Shell Programming and Scripting |
|
|
|
3 |
1,330 |
Shell Programming and Scripting |
|
|
|
2 |
3,344 |
Shell Programming and Scripting |
|
|
|
4 |
1,330 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
2,159 |
Shell Programming and Scripting |
|
|
|
2 |
1,973 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
2,463 |
Shell Programming and Scripting |
|
|
|
4 |
3,149 |
Shell Programming and Scripting |
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)
NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)