Unix and Linux Discussions Tagged with multiple |
|
Thread / Thread Starter |
Last Post |
Replies |
Views |
Forum |
|
|
|
3 |
5,135 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
7,770 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
8,066 |
Shell Programming and Scripting |
|
|
|
6 |
2,603 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
12,975 |
Shell Programming and Scripting |
|
|
|
1 |
16,384 |
Shell Programming and Scripting |
|
|
|
2 |
3,171 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
4,015 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
10,071 |
Shell Programming and Scripting |
|
|
|
0 |
10,694 |
Shell Programming and Scripting |
|
|
|
6 |
3,449 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
3,751 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
3,420 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
5,722 |
Shell Programming and Scripting |
|
|
|
2 |
4,050 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
5,308 |
Shell Programming and Scripting |
|
|
|
2 |
4,540 |
Shell Programming and Scripting |
|
|
|
2 |
3,309 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
9,541 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
4,887 |
UNIX for Beginners Questions & Answers |
|
|
|
15 |
4,724 |
UNIX for Beginners Questions & Answers |
|
|
|
8 |
3,697 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
2,441 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,728 |
UNIX for Beginners Questions & Answers |
|
|
|
2 |
2,922 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,559 |
UNIX for Beginners Questions & Answers |
|
|
|
17 |
4,911 |
UNIX for Beginners Questions & Answers |
|
|
|
1 |
11,016 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
1,713 |
UNIX for Beginners Questions & Answers |
|
|
|
9 |
1,764 |
UNIX for Beginners Questions & Answers |
|
|
|
5 |
4,958 |
UNIX for Beginners Questions & Answers |
|
|
|
6 |
1,780 |
Shell Programming and Scripting |
|
|
|
1 |
6,210 |
Shell Programming and Scripting |
|
|
|
3 |
1,391 |
Shell Programming and Scripting |
|
|
|
2 |
3,501 |
Shell Programming and Scripting |
|
|
|
4 |
1,380 |
UNIX for Beginners Questions & Answers |
|
|
|
3 |
2,241 |
Shell Programming and Scripting |
|
|
|
2 |
2,117 |
UNIX for Beginners Questions & Answers |
|
|
|
4 |
2,722 |
Shell Programming and Scripting |
|
|
|
4 |
3,304 |
Shell Programming and Scripting |
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)
NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)