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TFBS::PatternGen::Gibbs::Motif(3pm) User Contributed Perl Documentation TFBS::PatternGen::Gibbs::Motif(3pm)
NAME
TFBS::PatternGen::Gibbs::Motif - class for unprocessed motifs and associated numerical scores created by the Gibbs program
SYNOPSIS
DESCRIPTION
TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed motifs and associated numerical scores created by the Gibbs
program. You do not normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. They are created by running TFBS::PatternGen::Gibbs
FEEDBACK
Please send bug reports and other comments to the author.
AUTHOR - Boris Lenhard and Wynand Alkema
Boris Lenhard <Boris.Lenhard@cgb.ki.se> Wynand Alkema <Wynand.Alkema@cgb.ki.se>
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore.
MAP
Title : MAP
Usage : my $map_score = $motif->MAP;
Function: returns MAP score for the detected motif
(This is a backward compatibility method. For consistency,
you should use $motif->tag('MAP_score') instead
Returns : float (a scalar)
Args : none
Other methods
TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which inherits from TFBS::Matrix. Please consult the documentation of
those modules for additional available methods.
perl v5.14.2 2008-01-24 TFBS::PatternGen::Gibbs::Motif(3pm)