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will it create any problem while taking backup.
Probably since the system will be attempting to hit drives that can't be reached (or can be reached intermittently). Backup would probably take longer with numerous errors.
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is it possible for me to boot my system. bcz i hav last booted my system last 16 days back.
Booting will take some time due to the errors you will get - and WHY boot the server just because it's been up for 16 days? I have Sun servers that have been up for hundreds of days.