samhain 2.5.2 (Default branch)


 
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Old 01-29-2009
samhain 2.5.2 (Default branch)

samhain is a daemon that can check file integrity, search the file tree for SUID files, and detect kernel module rootkits (Linux only). It can be used either standalone or as a client/server system for centralized monitoring, with strong (192-bit AES) encryption for client/server connections and the option to store databases and configuration files on the server. For tamper resistance, it supports signed database/configuration files and signed reports/audit logs. It has been tested on Linux, FreeBSD, Solaris, AIX, HP-UX, and Unixware. License: GNU General Public License (GPL) Changes:
This release provides a new option to avoid reports for timestamp changes on directories. For open ports, PID is determined now, and reporting of open ports to prelude has been improved. A bug has been fixed that could cause truncation of the reported file size upon entering into an RDBMS, and some build problems have been fixed. Image

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TREE-PUZZLE(1)						      General Commands Manual						    TREE-PUZZLE(1)

NAME
tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood SYNOPSIS
tree-puzzle DESCRIPTION
This manual page documents briefly the tree-puzzle command. This manual page was written for the Debian GNU/Linux distribution because the original program does not have a manual page. TREE-PUZZLE is the new name for the program previously known as PUZZLE! tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addi- tion, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. There is also a paralellized version tree-ppuzzle available. OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf. SEE ALSO
phylip(1), treetool(1). tree-ppuzzle(1). This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others). April 20, 2001 TREE-PUZZLE(1)