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Special Forums News, Links, Events and Announcements Software Releases - RSS News Mandos 1.0.4 (Default branch)
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Old 01-15-2009
Mandos 1.0.4 (Default branch)
The Mandos system allows computers to have encrypted root file systems and at the same time be capable of remote or unattended reboots. The computers run a small client program in the initial RAM disk environment which will communicate with a server over a network. All network communication is encrypted using TLS. The clients are identified by the server using an OpenPGP key that is unique to each client. The server sends the clients an encrypted password. The encrypted password is decrypted by the clients using the same OpenPGP key, and the password is then used to unlock the root file system. License: GNU General Public License v3 Changes:
In the server, matched user/group pairs are only found when searching for a suitable nonprivileged user/group to switch to. In the client, the new kernel parameter "mandos=off" makes the client not run at boot. Linking errors and compilation warnings on AMD64 were fixed. Numbers in command line options are parsed better. The splashy and usplash plugins are more robust while traversing /proc, and will not abort if a process suddenly disappears. Image

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LEARN ABOUT DEBIAN

cd-hit-para

CD-HIT-PARA.PL(1)						   User Commands						 CD-HIT-PARA.PL(1)

NAME

       cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs

SYNOPSIS

       cd-hit-para.pl options

DESCRIPTION

	      This  script  divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel.  After
	      all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.

	      You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).

   Requirements:
	      1 When run this script over a network, the directory where you

	      run the scripts and the input files must be available on all the remote hosts with identical path.

	      2 If you choose "ssh" to submit jobs, you have to have

	      passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.

	      3 I suggest to use queuing system instead of ssh,

	      I currently support PBS and SGE

	      4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d

	      cd-hit-div cd-hit-div.pl must be in same directory where this script is in.

       Options

       -i input filename in fasta format, required

       -o output filename, required

       --P program, "cd-hit" or "cd-hit-est", default "cd-hit"

       --B filename of list of hosts,

	      requred unless -Q or -L option is supplied

       --L number of cpus on local computer, default 0

	      when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
	      just use "--L 1" unless you have enough RAM for each cpu

       --S Number of segments to split input DB into, default 64

       --Q number of jobs to submit to queue queuing system, default 0

	      by default, the program use ssh mode to submit remote jobs

       --T type of queuing system, "PBS", "SGE" are supported, default PBS

       --R restart file, used after a crash of run

       -h print this help

       More cd-hit/cd-hit-est options can be speicified in command line

	      Questions, bugs, contact Weizhong Li at liwz@sdsc.edu

cd-hit-para.pl 4.6-2012-04-25					    April 2012							 CD-HIT-PARA.PL(1)