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TreeLine 1.2.2 (Stable branch)
01-08-2009
TreeLine is used to organize and store text data in a tree structure. It is well suited to keeping track of many different types of information. Each node of the tree can contain several defined fields, forming a mini-database. The format of each node can be defined, and the output can be shown on the screen, printed, or exported to HTML. The tree structure is navigated and edited in the left pane of the window, while various views of the child data are shown and editable in the right pane. The data is stored in XML text files. TreeLine is based on the PyQt library. License: GNU General Public License (GPL) Changes:|
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TREE-PUZZLE(1) General Commands Manual TREE-PUZZLE(1) NAME
tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood SYNOPSIS
tree-puzzle DESCRIPTION
This manual page documents briefly the tree-puzzle command. This manual page was written for the Debian GNU/Linux distribution because the original program does not have a manual page. TREE-PUZZLE is the new name for the program previously known as PUZZLE! tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addi- tion, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. There is also a paralellized version tree-ppuzzle available. OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf. SEE ALSO
phylip(1), treetool(1). tree-ppuzzle(1). This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others). April 20, 2001 TREE-PUZZLE(1)