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Himerge 0.30.36.1 (Default branch)
12-31-2008
Himerge is a GUI for emerge (Gentoo's Portage system) written in Haskell using gtk2hs. The main idea is to simplify browsing the entire portage tree, and allow running the most basic and common options from the emerge command. It also offers several handy tools, like global and local use flags browsers, inspired by UFED (the Gentoo Linux USE flags editor). It also uses eix (a small utility for searching ebuilds with indexing for fast results) as a back-end command to show package information in HTML/CSS format, so you can access a package's Web site for a quick glance. License: GNU General Public License (GPL) Changes:|
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TREE-PUZZLE(1) General Commands Manual TREE-PUZZLE(1) NAME
tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood SYNOPSIS
tree-puzzle DESCRIPTION
This manual page documents briefly the tree-puzzle command. This manual page was written for the Debian GNU/Linux distribution because the original program does not have a manual page. TREE-PUZZLE is the new name for the program previously known as PUZZLE! tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addi- tion, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. There is also a paralellized version tree-ppuzzle available. OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf. SEE ALSO
phylip(1), treetool(1). tree-ppuzzle(1). This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others). April 20, 2001 TREE-PUZZLE(1)