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Special Forums News, Links, Events and Announcements Software Releases - RSS News Basic Local Alignment Search Tool 2.2.19 (Default branch)
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Old 12-18-2008
Basic Local Alignment Search Tool 2.2.19 (Default branch)
BLAST is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. It uses a heuristic algorithm which seeks local as opposed to global alignments, and is therefore able to detect relationships among sequences which share only isolated regions of similarity. It can be run locally as a full executable, and can be used to run BLAST searches against private, local databases, or downloaded copies of the NCBI databases. It runs on Mac OS, Win32, LINUX, Solaris, IBM AIX, SGI, Compaq OSF, and HP- UX systems. License: Open Software License Changes:
The BLASTDB environment variable now supports multiple database search paths. When possible, a smaller protein lookup table is used to improve performance. formatrpsdb now supports creating databases larger than 2G. seedtop now supports searches with gi lists. The X3 value for blastn/megablast was corrected. Image

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gnome-search-tool

gnome-search-tool(1)					      General Commands Manual					      gnome-search-tool(1)

NAME

       gnome-search-tool - the GNOME Search Tool

SYNOPSIS

       gnome-search-tool [options]

       or select Search for Files...  from a Main Menu or from the Places menu in a Menu Bar

DESCRIPTION

       GNOME  Search Tool is a utility for finding files on your system. To perform a basic search, you can type a filename or a partial filename,
       with or without wildcards. To refine your search, you can apply additional search options.

       GNOME Search Tool uses the find, grep, and locate UNIX commands. The case sensitivity of the search depends on your operating  system.  For
       example, on Linux, the find, grep, and locate commands support the -i option, so all searches are case-insensitive.

       For full documentation see the GNOME Search Tool online help.

OPTIONS

       --help Show help message

       --named=STRING
	      Set the text of "Name contains" search option

       --path=PATH
	      Set the text of "Look in folder" search option

       --sortby=VALUE
	      Sort files by one of the following: name, folder, size, type, or date

       --descending
	      Set sort order to descending, the default is ascending

       --start
	      Automatically start a search

       --contains=STRING
	      Select and set the "Contains the text" search option

       --mtimeless=DAYS
	      Select and set the "Date modified less than" search option

       --mtimemore=DAYS
	      Select and set the "Date modified more than" search option

       --sizemore=KILOBYTES
	      Select and set the "Size at least" search option

       --sizeless=KILOBYTES
	      Select and set the "Size at most" search option

       --empty
	      Select the "File is empty" search option

       --user=USER
	      Select and set the "Owned by user" search option

       --group=GROUP
	      Select and set the "Owned by group" search option

       --nouser
	      Select the "Owner is unrecognized" search option

       --notnamed=STRING
	      Select and set the "Name does not contain" search option

       --regex=PATTERN
	      Select and set the "Name matches regular expression" search option

       --hidden
	      Select the "Show hidden and backup files" search option

       --follow
	      Select the "Follow symbolic links" search option

       --mounts
	      Select the "Exclude other filesystems" search option

AUTHOR

       GNOME  Search  Tool  was  originally  written  by  George  Lebl	(<jirka@5z.com>).   Version  2	was  written  by Dennis M. Cranston (<den-
       nis_cranston@yahoo.com>).

       This manual page was originally written by Jochen Voss <voss@mathematik.uni-kl.de>.  Version 2 was written by  Dennis  M.  Cranston  (<den-
       nis_cranston@yahoo.com>).

SEE ALSO

       find(1), locate(1), grep(1)

gnome-utils 2.27.1						   March 16 2009					      gnome-search-tool(1)