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Special Forums News, Links, Events and Announcements Software Releases - RSS News Basic Local Alignment Search Tool 2.2.19 (Default branch)
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Old 12-18-2008
Basic Local Alignment Search Tool 2.2.19 (Default branch)
BLAST is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. It uses a heuristic algorithm which seeks local as opposed to global alignments, and is therefore able to detect relationships among sequences which share only isolated regions of similarity. It can be run locally as a full executable, and can be used to run BLAST searches against private, local databases, or downloaded copies of the NCBI databases. It runs on Mac OS, Win32, LINUX, Solaris, IBM AIX, SGI, Compaq OSF, and HP- UX systems. License: Open Software License Changes:
The BLASTDB environment variable now supports multiple database search paths. When possible, a smaller protein lookup table is used to improve performance. formatrpsdb now supports creating databases larger than 2G. seedtop now supports searches with gi lists. The X3 value for blastn/megablast was corrected. Image

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search::gin::query::set

Search::GIN::Query::Set(3pm)				User Contributed Perl Documentation			      Search::GIN::Query::Set(3pm)

NAME

       Search::GIN::Query::Set - Create queries with set operations

VERSION

       version 0.08

SYNOPSIS

	   # build a query like:
	   # (type:pdf OR type:png) AND (name:Homer OR name:Bart)

	   use Search::GIN::Query::Set;
	   use Search::GIN::Query::Manual;

	   my $query = Search::GIN::Query::Set->new(
	       operation => 'INTERSECT',
	       subqueries => [
		   Search::GIN::Query::Manual->new(
		       values => {
			  type => [qw(pdf png)]
		       }
		   ),
		   Search::GIN::Query::Manual->new(
		       values => {
			  name => [qw(Homer Bart)]
		       }
		   ),
	       ]
	   );

DESCRIPTION

       Creates a manual GIN query that can be used to search using basic set theory, in order to build more complex queries.

       This query doesn't provide any specific search, it's just a set operator for subqueries. You can build complex queries by using other set
       queries as subqueries for a set query.

METHODS
/SUBROUTINES
   new
       Creates a new query.

ATTRIBUTES

   subqueries
       The subqueries to process

   operation
       One of the basic set operators: "UNION", "INTERSECT" and "EXCEPT". The default is "UNION"

AUTHOR

       Yuval Kogman <nothingmuch@cpan.org>

COPYRIGHT AND LICENSE

       This software is copyright (c) 2010 by Yuval Kogman, Infinity Interactive.

       This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

perl v5.10.1							    2011-01-31					      Search::GIN::Query::Set(3pm)