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Special Forums News, Links, Events and Announcements Software Releases - RSS News French AGGIR Calculator 1.00 (Default branch)
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Old 10-15-2008
French AGGIR Calculator 1.00 (Default branch)
French AGGIR Calculator is a very small application that calculates the AGGIR score, a medical score that classifies patients into six different degrees of dependence. It is used by doctors and the French administration. You can use this application on the command line, integrate the source into your own project. It is written in pure C/C++ and is cross-compilable. Image

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LEARN ABOUT DEBIAN

tmalign

TMALIGN(1)						      General Commands Manual							TMALIGN(1)

NAME

       TMalign - protein structure alignment

SYNOPSIS

       TMalign structure.pdbtarget.pdb[options]

DESCRIPTION

       TMalign performs a structural alignment of proteins. The alignment is scored by the TM-score algorithm.

OPTIONS

       When  started  with  no	options, a summary of commands is given. With two protein structures presented as arguments, the TM-score uses the
       length of the second protein to be normalised.  The final structural alignment is invariant to any of the options below.

       -L     number normalises TM-score by an assigned length (in aa)

       -a     normalises TM-score by the average length of the two structures

       -b     normalises TM-score by the length of the shorter of the two structures

       -c     normalises TM-score by the length of the longer of the two structures

       -o     filename Run TM-align and output the superposition to 'filename.sup' and 'filename.sup_all'.  The output files serve as  scripts	to
	      the program rasmol.  To view the superimposed structures of the aligned regions call
	       'rasmol -script TM.sup' To view the superimposed structures of all regions
	       'rasmol -script TM.sup_all'.

SEE ALSO

       http://zhang.bioinformatics.ku.edu/TM-align/, rasmol(1)
       When  using  this  proram  and  for  more  detailed information, please refer to the publication in NucleicAcidsRes.  (2005) Volume 33 page
       2303ff. by Zhang and Skolnick.

AUTHOR

       tm-align was written by Zhang and Skolnick.

       This manual page was written by Steffen Moeller <moeller@debian.org>, for the Debian project (but may be used by others).

								 October 21, 2007							TMALIGN(1)