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Old 10-14-2008
FastDup 0.2 (Default branch)
FastDup is a tool to find identical files within directory trees, with a focus on the ability to scan very large trees and files in reasonable amounts of time. The use of clever techniques and optimizations to avoid comparisons allows fastdup to significantly outperform many existing solutions, and has a benefit of being entirely I/O bound (insignificant CPU usage). It is released under a modified BSD license, allowing all use, redistribution, and modification for non-commercial purposes. License: BSD License (revised) Changes:
This release includes vast improvements in memory usage, especially when scanning large numbers of files, and more informative and active output. Numerous internal changes were also made with the aim of cleanliness and future expandability. Image

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LEARN ABOUT DEBIAN

tree-ppuzzle

TREE-PPUZZLE(1) 					      General Commands Manual						   TREE-PPUZZLE(1)

NAME

       tree-ppuzzle - Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)

SYNOPSIS

       tree-ppuzzle

DESCRIPTION

       This  manual  page  documents briefly the tree-ppuzzle command.	This manual page was written for the Debian GNU/Linux distribution because
       the original program does not have a manual page.

       TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!

       tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large
       data  sets and automatically assigns estimations of support to each internal branch. TREE-PPUZZLE also computes pairwise maximum likelihood
       distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the  clock-assumption.  In  addi-
       tion,  TREE-PPUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without comput-
       ing an overall tree and to visualize the phylogenetic content of a sequence alignment.

       This program is the paralelized version of tree-puzzle.

OPTIONS

       There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.

SEE ALSO

       phylip(1), treetool(1).	tree-puzzle(1).

       This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others).

								  April 20, 2001						   TREE-PPUZZLE(1)