|
|
Social Networks Visualiser 0.46 (Default branch)
09-11-2008
Social Networks Visualiser (SocNetV) imports and exports various networkfile formats (pajek, sociomatrix, dot) and displays the network onscreen. It can create random networks (lattice, same degree, etc.). Theuser can visually modify an existing network or draw a new one using themouse. Network and actor properties, such as distances, centralities,diameter, etc., can easily be computed.License: GNU General Public License v3Changes:|
|
Bio::PhyloNetwork::Factory(3pm) User Contributed Perl Documentation Bio::PhyloNetwork::Factory(3pm) NAME
Bio::PhyloNetwork::Factory - Module to sequentially generate Phylogenetic Networks SYNOPSIS
use strict; use warnings; use Bio::PhyloNetwork; use Bio::PhyloNetwork::Factory; # Will generate sequentially all the 4059 binary tree-child phylogenetic # networks with 4 leaves my $factory=Bio::PhyloNetwork::Factory->new(-numleaves=>4); my @nets; while (my $net=$factory->next_network()) { push @nets,$net; print "".(scalar @nets).": ".$net->eNewick()." "; } DESCRIPTION
Sequentially builds a (binary tree-child) phylogenetic network each time next_network is called. AUTHOR
Gabriel Cardona, gabriel(dot)cardona(at)uib(dot)es SEE ALSO
Bio::PhyloNetwork APPENDIX
The rest of the documentation details each of the object methods. new Title : new Usage : my $factory = new Bio::PhyloNetwork::Factory(); Function: Creates a new Bio::PhyloNetwork::Factory Returns : Bio::PhyloNetwork::RandomFactory Args : -numleaves => integer OR -leaves => reference to an array (of leaves names) -numhybrids => integer [default = numleaves -1] -recurse => boolean [optional] Returns a Bio::PhyloNetwork::Factory object. Such an object will sequentially create binary tree-child phylogenetic networks each time next_network is called. If the parameter -leaves=>@leaves is given, then the set of leaves of these networks will be @leaves. If it is given the parameter -numleaves=>$numleaves, then the set of leaves will be "l1"..."l$numleaves". If the parameter -numhybrids=>$numhybrids is given, then the generated networks will have at most $numhybrids hybrid nodes. Note that, necessarily, $numhybrids < $numleaves. If the parameter -recurse=>1 is given, then all networks with number of hybrid nodes less or equal to $numhybrids will be given; otherwise only those with exactly $numhybrids hybrid nodes. next_network Title : next_network Usage : my $net=$factory->next_network() Function: returns a network Returns : Bio::PhyloNetwork Args : none perl v5.14.2 2012-03-02 Bio::PhyloNetwork::Factory(3pm)