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LEARN ABOUT DEBIAN

bio::annotation::typemanager

Bio::Annotation::TypeManager(3pm)			User Contributed Perl Documentation			 Bio::Annotation::TypeManager(3pm)

NAME

       Bio::Annotation::TypeManager - Manages types for annotation collections

SYNOPSIS

	   # default type manager

	   $tm = Bio::Annotation::TypeManager->new();

	   # $key is a string or a Bio::Ontology::TermI compliant object
	   print "The type for $key is ",$tm->type_for_key($key),"
";

	   if( !$tm->is_valid($key,$object) ) {
	       $self->throw("Invalid object for key $key");
	   }

DESCRIPTION

       Manages types for annotation collections.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
	to one of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution.  Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Ewan Birney
       Email birney@ebi.ac.uk

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	:
	Function:
	Example :
	Returns :
	Args	:

   type_for_key
	Title	: type_for_key
	Usage	:
	Function:
	Example :
	Returns :
	Args	:

   is_valid
	Title	: is_valid
	Usage	:
	Function:
	Example :
	Returns :
	Args	:

   _add_type_map
	Title	: _add_type_map
	Usage	:
	Function:
	Example :
	Returns :
	Args	:

perl v5.14.2							    2012-03-02					 Bio::Annotation::TypeManager(3pm)

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