AMEN: v.1.1.2 released, four changes & three bugs fixed !


 
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Special Forums News, Links, Events and Announcements Software Releases - RSS News AMEN: v.1.1.2 released, four changes & three bugs fixed !
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Old 07-25-2008
AMEN: v.1.1.2 released, four changes & three bugs fixed !

AMEN (Annotation, Mapping, Expression and Network) is a stand-alone, unified suite of tools to manage, explore and combine biological multifaceted high-throughput data such as annotation, chromosomal location, expression and interaction data.
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Config::Model::Annotation(3pm)				User Contributed Perl Documentation			    Config::Model::Annotation(3pm)

NAME
Config::Model::Annotation - Read and write configuration annotations VERSION
version 2.021 SYNOPSIS
use Config::Model ; use Log::Log4perl qw(:easy) ; Log::Log4perl->easy_init($WARN); # define configuration tree object my $model = Config::Model->new ; $model ->create_config_class ( name => "MyClass", element => [ [qw/foo bar/] => { type => 'leaf', value_type => 'string' }, baz => { type => 'hash', index_type => 'string' , cargo => { type => 'leaf', value_type => 'string', }, }, ], ) ; my $inst = $model->instance(root_class_name => 'MyClass' ); my $root = $inst->config_root ; # put some data in config tree the hard way $root->fetch_element('foo')->store('yada') ; $root->fetch_element('baz')->fetch_with_id('en')->store('hello') ; # put annotation the hard way $root->fetch_element('foo')->annotation('english') ; $root->fetch_element('baz')->fetch_with_id('en')->annotation('also english') ; # put more data the easy way my $step = 'baz:fr=bonjour#french baz:hr="dobar dan"#croatian'; $root->load( step => $step ) ; # dump resulting tree with annotations print $root->dump_tree; # save annotations my $annotate_saver = Config::Model::Annotation -> new ( config_class_name => 'MyClass', instance => $inst , root_dir => '/tmp/', # for test ) ; $annotate_saver->save ; # now check content of /tmp/config-model/MyClass-note.pl DESCRIPTION
This module provides an object that read and write annotations (a bit like comments) to and from a configuration tree and save them in a file (not configuration file) Depending on the effective id of the process, the annotation will be saved in: o "/var/lib/config-model/<model_name>-note.yml" for root (EUID == 0) o "~/.config-model/<model_name>-note.yml" for normal user (EUID > 0) CONSTRUCTOR
Quite standard. The constructor is passed a Config::Model::Instance object. METHODS
save() Save annotations in a file (See DESCRIPTION) load() Loads annotations from a file (See DESCRIPTION) AUTHOR
Dominique Dumont, (ddumont at cpan dot org) SEE ALSO
Config::Model, Config::Model::Node, Config::Model::Loader, Config::Model::Searcher, Config::Model::Value, perl v5.14.2 2012-11-09 Config::Model::Annotation(3pm)