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massXpert mass spectrometry package 1.7.7 (Default branch)

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Special Forums News, Links, Events and Announcements Software Releases - RSS News massXpert mass spectrometry package 1.7.7 (Default branch)
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Old 07-04-2008
massXpert mass spectrometry package 1.7.7 (Default branch)
Image The massXpert software package is a mass spectrometry environment for linear (bio-)polymers. It inherits all the innovations of GNU polyxmass. It allows the detailed definition of new polymer chemistries in the XpertDef module. These chemistry definitions are then used in the desktop calculator-like mass calculator (XpertCalc) and in the sophisticated polymer sequence editor and (bio-)chemical/mass spectrometric simulations module (XpertEdit). Available simulations include polymer and monomer chemical modifications, polymer sequence cleavage, gas-phase fragmentation, m/z ratio calculations, and more. License: GNU General Public License (GPL) Changes:
This release can select an arbitrary number of regions in the polymer sequence. This feature is required to make the most out of the cross-linking simulations available in massXpert. The implications of this new development are pervasive all through the project and should allow even more intuitive simulations to be performed in the XpertEdit module.Image

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LEARN ABOUT DEBIAN

mmass

MMASS(1)						      General Commands Manual							  MMASS(1)

NAME

       mmass - a free mass spectrometry tool for proteomics

SYNOPSIS

       mmass

DESCRIPTION

       mmass  is  a free mass spectrometry tool for proteomics. Its main feature is its capability to load mass spectral data in its powerful mass
       spectrum viewer. The program can load data in the following formats: mzData, mzXML, raw text. The mass spectrum viewer allows performing  a
       large  number of operations commonly required when analyzing mass spectrometry data (zoom, pan, rapid delta-mass calculations, peak picking
       and so forth). The program will allow defining peak lists, recalibrating spectra, performing some protein-only simulations  and	doing  on-
       line Mascot searches.

BIBLIOGRAPHICAL REFERENCES TO BE CITED

       Strohalm  M, Kavan D, Novak P, Volny M, Havlicek V: mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectromet-
       ric Data. Anal Chem 82 (11), 4648-51 (2010). DOI:10.1021/ac100818g

       Strohalm M, Hassman M, Koata B, Kodiek M: mMass data miner: an open source alternative for mass spectrometric data analysis.  Rapid  Commun
       Mass Spec 22 (6), 905-908 (2008). DOI:10.1002/rcm.3444

SEE ALSO

       mmass-modules (3), mmass-doc(7).

AUTHORS

       Martin Strohalm <support@mmass.org>
	   Program author (contact him via http://www.mmass.org website's form).

       Filippo Rusconi <rusconi-debian@laposte.net>
	   Man-page author for the Debian distribution.

COPYRIGHT

       Copyright (C) 2005-2010 Martin Strohalm
       Copyright (C) 2010,2011 Filippo Rusconi

       This  manual page was written by Filippo Rusconi <rusconi-debian@laposte.net> for the Debian system (but may be used by others). Permission
       is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 3, published  by  the
       Free Software Foundation.

	On   a	 Debian   system   the	 complete   text   of	the   GNU  General  Public  License  version  3  can  be  found  in  the  file	`-
       /usr/share/common-licenses/GPL-3'.

								   November 2009							  MMASS(1)