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Finnix 92.0 (Default branch)
06-29-2008
Finnix is a small, self-contained, bootable Linux CD distribution ("LiveCD") for system administrators, based on Debian testing "etch". You can use it to mount and manipulate hard drives and partitions, monitor networks, rebuild boot records, install other operating systems, and much more. License: GNU General Public License (GPL) Changes:|
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TREE-PPUZZLE(1) General Commands Manual TREE-PPUZZLE(1) NAME
tree-ppuzzle - Reconstruction of phylogenetic trees by maximum likelihood (parallelized version) SYNOPSIS
tree-ppuzzle DESCRIPTION
This manual page documents briefly the tree-ppuzzle command. This manual page was written for the Debian GNU/Linux distribution because the original program does not have a manual page. TREE-PPUZZLE is the new name for the program previously known as PPUZZLE! tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PPUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addi- tion, TREE-PPUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without comput- ing an overall tree and to visualize the phylogenetic content of a sequence alignment. This program is the paralelized version of tree-puzzle. OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf. SEE ALSO
phylip(1), treetool(1). tree-puzzle(1). This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others). April 20, 2001 TREE-PPUZZLE(1)