|
|
Social Networks Visualiser 0.44 (Default branch)
05-01-2008
Social Networks Visualiser (SocNetV) imports and exports various network file formats (pajek, sociomatrix, dot) and displays the network on screen. It can create random networks (lattice, same degree, etc.). The user can visually modify an existing network or draw a new one using the mouse. Network and actor properties, such as distances, centralities, diameter, etc., can easily be computed. License: GNU General Public License v3 Changes:|
|
Bio::PhyloNetwork::RandomFactory(3pm) User Contributed Perl Documentation Bio::PhyloNetwork::RandomFactory(3pm) NAME
Bio::PhyloNetwork::RandomFactory - Module to generate random Phylogenetic Networks SYNOPSIS
use strict; use warnings; use Bio::PhyloNetwork; use Bio::PhyloNetwork::RandomFactory; # Will generate at random all the 66 binary tree-child phylogenetic # networks with 3 leaves my $factory=Bio::PhyloNetwork::RandomFactory->new(-numleaves=>3,-norepeat=>1); my @nets; for (my $i=0; $i<66; $i++) { my $net=$factory->next_network(); push @nets,$net; print "".(scalar @nets).": ".$net->eNewick()." "; } DESCRIPTION
Builds a random (binary tree-child) phylogenetic network each time next_network is called. AUTHOR
Gabriel Cardona, gabriel(dot)cardona(at)uib(dot)es SEE ALSO
Bio::PhyloNetwork APPENDIX
The rest of the documentation details each of the object methods. new Title : new Usage : my $factory = new Bio::PhyloNetwork::RandomFactory(); Function: Creates a new Bio::PhyloNetwork::RandomFactory Returns : Bio::PhyloNetwork::RandomFactory Args : -numleaves => integer OR -leaves => reference to an array (of leaves names) -numhybrids => integer [optional] -norepeat => boolean [optional] Returns a Bio::PhyloNetwork::RandomFactory object. Such an object will create random binary tree-child phylogenetic networks each time next_network is called. If the parameter -leaves=>@leaves is given, then the set of leaves of these networks will be @leaves. If it is given the parameter -numleaves=>$numleaves, then the set of leaves will be "l1"..."l$numleaves". If the parameter -numhybrids=>$numhybrids is given, then the generated networks will have exactly $numhybrids hybrid nodes. Note that, necessarily, $numhybrids < $numleaves. Otherwise, the number of hybrid nodes will be chosen at random for each call of next_network. If the parameter -norepeat=>1 is given, then successive calls of next_network will give non-isomorphic networks. next_network Title : next_network Usage : my $net=$factory->next_network() Function: returns a random network Returns : Bio::PhyloNetwork Args : none perl v5.14.2 2012-03-02 Bio::PhyloNetwork::RandomFactory(3pm)