Chemical Structures 2.1 (Default branch)


 
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Old 02-05-2008
Chemical Structures 2.1 (Default branch)

Image The Chemical Structures project aims to provide a complete set of 3D molecular structures in CML format. As CML format permits structural data and many properties to be included, each file also contains additional information, like molecular weight, boiling point, melting point, or InChI code. Data can be explored with a CML-aware software, like Jmol, or by using a Web browser. License: BSD License (revised) Changes:
The HTML pages have a new style and contain MicroFormat data. Many French translations have been added and Spanish translations are also available. New structures (like carbohydrates) have been added. The project now includes 559 structures.Image

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ADUNCORE(1)						      General Commands Manual						       ADUNCORE(1)

NAME
AdunCore - core module of the Adun molecular simulator SYNOPSIS
AdunCore [OPTIONS] DESCRIPTION
This manual page documents briefly the AdunCore command. AdunCore is the core module of the Adun molecular simulator. It is launched automatically from the UL GUI but can be used from the GNU/Linux console as well. Options to AdunCore must be specified as value pairs in the form `-Option Value'. The following options are available: -Template A valid Adun template. This is the only option that is mandatory. -ExternalObjects A dictionary in plist format. Its contents extend the externalObjects section of the template. If there are duplicate keys this dictionary takes precedence. -SimulationOutputDir Directory where simulation data directory will be stored. (Default value: SimulationOutput) -ControllerOutputDir Directory where controller data will be stored. (Default value: ControllerOutput) -CreateLogFiles If YES log files are created. If NO they are not. (Default value: YES) -LogFile File where the program output will be written. (Default value: AdunCore.log) -ErrorFile File where program errors and warnings will be written. (Default value: AdunCore.errors) -RedirectOutput If YES the log files will be moved to the simulation output directory. (Default value: YES) -RunInteractive If YES the simulation loop is spawned as a separate thread. The main thread then enters a run loop and can serve external requests. If NO then interaction is not possible with the simulation. (Default value: NO) -ConnectToAdServer If YES the simulation registers its existance with a local AdServer daemon. This allows the simulation to be viewed and controlled from the Adun GUI. (Default value: NO) SEE ALSO
UL(1), AdunServer(1), GNUstep(7). AUTHOR
AdunServer was written by Michael A. Johnston, I. F. Galvn, Jordi Vill-Freixa, Alexander V. Diemand. This manual page was written by Yavor Doganov <yavor@gnu.org> for the Debian project (but may be used by others). January 19, 2008 ADUNCORE(1)