10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a file of ~500,000 entries in the following:
file.txt
chr1 11868 12227 ENSG00000223972.5 . + HAVANA exon . gene_id "ENSG00000223972.5"; transcript_id "ENST00000456328.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type... (17 Replies)
Discussion started by: cmccabe
17 Replies
2. Shell Programming and Scripting
I am trying using awk to open an input file and check a column 2/field $2 and if there is a warning then that is displayed (variantchecker): G not found at position 459, found A instead. The attached Sample1.txt is that file. If in that column/field there is a black space, then the text after... (6 Replies)
Discussion started by: cmccabe
6 Replies
3. Shell Programming and Scripting
awk -F "" '/<href=>|<href=>|<top>|<top>/ {print $3, OFS=\t}' source.txt > output.txt
I'm not quite sure how to parse the attached file, but what I am trying to do is in a output file have the link (href=), name (after the <), and count (<top>) in 3 separate columns.
My attempt is the above... (2 Replies)
Discussion started by: cmccabe
2 Replies
4. Shell Programming and Scripting
Hello all, I tried searching for something similiar before posting but couldn't come up with anything that fit what I need.
In Linux, I'm trying to parse through a number of files and take the info in them and put it into mysql. My file is a dump from an expect script:
---filename... (3 Replies)
Discussion started by: hamanjam
3 Replies
5. Shell Programming and Scripting
I wanted to parse a text file and join in specific format. please suggest me how to get this done..
The output should be in fasta format which consists of lines starting with ID, PT, PA and Sequence. "//" the two slashes are dividing lines between two different sequences.
Like... (10 Replies)
Discussion started by: empyrean
10 Replies
6. Shell Programming and Scripting
Hi guys,
I desperately need some help here...
I need to parse a file similar to this:
I need to read the values for MY_BANNER_SSHD and WARNING_MESSAGE. The value could be empty/single line or multi-line!
# Comments
.
.
.
Some lines
MY_BANNER_SSHD=""... (7 Replies)
Discussion started by: shreeda
7 Replies
7. Shell Programming and Scripting
I have a file name version.properties with the following data:
major.version=14
minor.version=234
I'm trying to write a grep expression to only put "14" to stdout. The following is not working.
grep "major.version=(+)" version.properties
What am I doing wrong? (6 Replies)
Discussion started by: obfunkhouser
6 Replies
8. UNIX for Dummies Questions & Answers
Hi, everyone
The input file pattern is like below:
Begin Object1
txt1
end
;
Begin Object2
txt2
end
;
... (14 Replies)
Discussion started by: sophiadun
14 Replies
9. Shell Programming and Scripting
I have a file that has a header followed by 8 columns of data. I want to toss out the header, and then write the data to another file with a different header and footer. I also need to grab the first values of the first and second column to put in the header.
How do I chop off the header? ... (9 Replies)
Discussion started by: craggm
9 Replies
10. UNIX for Dummies Questions & Answers
Please help.
I have a text file which looks something like this
aaa@abc.com, c:FilePath\Eaaa.txt
bbb@abc.com, c:FilePath\Ebbb.txt
ccc@abc.com, c:FilePath\Eccc.txt
ddd@abc.com, c:FilePath\Eddd.txt...so on
I want to write a shell script which will pick up the first field 'aaa@abc.com' and... (12 Replies)
Discussion started by: Amruta Pitkar
12 Replies