10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
Brand new to these forums, and I hope that someone can help me out.
I'm trying to run the following command in UNIX
java -jar GenomeAnalysisTK.jar -T SplitSamFile -dt NONE -R reference.fa -I my.bam --outputRoot /my/path/SampleFiles/Sample_
It executes the SplitSamFile from GATK, but I... (3 Replies)
Discussion started by: Wixaros
3 Replies
2. UNIX for Advanced & Expert Users
Dear All members,
i have some trouble here, i want to ask your help. The case is:
I have some data, it's like:
-ABCD1234
-ABCD1235
-ABCD1237
-BCDE1111
-BCDE1112
-BCDE1114
there is some missing data's sequence (the format is: ABCD = name 1234 = sequence).
I want to print the... (2 Replies)
Discussion started by: septian.tri
2 Replies
3. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
4. Homework & Coursework Questions
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
Im still pretty new to this and could really use some help with this task
"Write a script to check in the... (12 Replies)
Discussion started by: krolike
12 Replies
5. Shell Programming and Scripting
The input is:
>HWI-EAS382_30FC7AAXX:4:1:1580:1465
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:4:1:1062:1640
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:4:1:272:629
AAAAAAAAGCTATAGTCTCGTCACACATACTCACAA
>HWI-EAS382_30FC7AAXX:4:1:1033:1135... (4 Replies)
Discussion started by: patrick chia
4 Replies
6. UNIX for Dummies Questions & Answers
Hi,
Is there a way to create sequence numbers in unix
i have a set of batches(which contain records) and i want to assign a number to every batch. how can i do that? (1 Reply)
Discussion started by: dnat
1 Replies
7. Shell Programming and Scripting
Hi Guru's,
I need to check the availability of a web page for every one hour through a script. Following is the requirement.
1. Go to http://vsn.srivsn.com
2. If any error encountered in openeing the home page, it should trigger an email with the appropriate error message.
3. If page opens... (6 Replies)
Discussion started by: srivsn
6 Replies
8. Shell Programming and Scripting
The following script have some bug...can you all help me:
#!/bin/sh
start=1
for file_number in `ls -1 /appl/CH_DATA/archive/list1/CACHE/CDBACKUPFILEJohn*.archived | sort | cut -c 48,49,50,51`
do
if ; then
# this is the first pass of the loop, so we've got nothing to compare
start=0... (3 Replies)
Discussion started by: happyv
3 Replies
9. UNIX for Dummies Questions & Answers
Hi there,
I'm wanting to produce a shell script that will check through some file names and identify a skip in sequence (four digit seq num in file name).
I have played on the idea of havng a file that has a sorted list of file names which I can read line at a time and cut out the sequence... (1 Reply)
Discussion started by: nhatch
1 Replies
10. UNIX for Advanced & Expert Users
Hello all Unix fans.
What files are involved in the Unix boot sequence,
i guess there is alot of them but some must be the main files?
For example the service SENDMAIL starts on our Unix machine
where should i edit so that it will not start at BOOT.
initd.conf? rc2.d?
I hope you... (6 Replies)
Discussion started by: sajjan2
6 Replies
Unix script for Checking sequence