10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi,
I need help to match patterns from between two different files and extract region of strings.
inputfile1.fa
>l-WR24-1:1
GCCGGCGTCGCGGTTGCTCGCGCTCTGGGCGCTGGCGGCTGTGGCTCTACCCGGCTCCGG
GGCGGAGGGCGACGGCGGGTGGTGAGCGGCCCGGGAGGGGCCGGGCGGTGGGGTCACGTG... (4 Replies)
Discussion started by: bunny_merah19
4 Replies
2. UNIX for Beginners Questions & Answers
I have a two file as shown below,
file:1
>Contig_152_415 (REVERSE SENSE)
>Contig_152_420 (REVERSE SENSE)
>Contig_152_472 (REVERSE SENSE)
>Contig_152_484 (REVERSE SENSE)
File:2
>Contig_152:49081-49929
ATCGAGCAGCGCCGCGTGCGGTGCACCCTTGTGCAGATCGGGAGTAACCACGCGCACGGC... (2 Replies)
Discussion started by: dineshkumarsrk
2 Replies
3. Shell Programming and Scripting
Hello All Unix Users,
I am still new to Unix, however I am eager to learn it..
I have 2 files, some lines have some matching substrings, I would like to concatenate these lines into one lines, leaving other untouched. Here below is an example for that..
File 1 (fasta file):
>292183... (6 Replies)
Discussion started by: Mohamed EL Hadi
6 Replies
4. Shell Programming and Scripting
Hallo Everyone.
I have to admit I'm shell scripting illiterate . I need to find certain strings in several text files and replace each of the string by unique & corresponding text.
I prepared a csv file with 3 columns: <filename>;<old_pattern>;<new_pattern>
... (5 Replies)
Discussion started by: gordom
5 Replies
5. Shell Programming and Scripting
I am trying to extract multiple strings from snmp-mib files like below.
-----
$ cat IF-MIB.mib
<snip>
linkDown NOTIFICATION-TYPE
OBJECTS { ifIndex, ifAdminStatus, ifOperStatus }
STATUS current
DESCRIPTION
"A linkDown trap signifies that the SNMP entity, acting in... (5 Replies)
Discussion started by: genzo
5 Replies
6. Shell Programming and Scripting
Have two files and want to compare the content of file1 with file2. When matched remove the line.
awk 'NR==FNR {b; next} !(b in $0)' file1 file2file1
1. if match
2. removefile2
1. this line has to be removed if match
2. this line has a match, remove
3. this line has no match, no removingThe... (3 Replies)
Discussion started by: sdf
3 Replies
7. Shell Programming and Scripting
Hi all,
Please go through my requirement.
I have a log file in the location /opt/WebSphere61/AppServer/profiles/EMQbatchprofile/logs/EMQbatch
This file contains the follwing pattern data
<af type="tenured" id="42" timestamp="May 14 13:44:13 2011" intervalms="955.624">
<minimum... (8 Replies)
Discussion started by: satish.vampire
8 Replies
8. Shell Programming and Scripting
input file
Desired csv output
gc_type, date/time, milli secs
af, Mar 17 13:09:04 2011, 144.596
af, Mar 20 00:37:37 2011, 144.242
af, ar 20 21:30:59 2011, 108.518
Hi All,
Any help in acheiving the above would be appreciated. I would like to parse through lines within one file and... (5 Replies)
Discussion started by: satish.vampire
5 Replies
9. Shell Programming and Scripting
I'm trying to extract all the lines between 2 strings (including the lines containing the strings)
To make the strings unique I need to include white space if possible. I'm not certain how to do that.
sed -n '/ string1 /,/string2/p' infile > outfile & (4 Replies)
Discussion started by: dcfargo
4 Replies
10. Shell Programming and Scripting
Hi.
I have a text test1.txt file like:Receipt
Line1
Line2
Line3
End
Receipt
Line4
Line5
Line6
Canceled
Receipt
Line7
Line8
Line9
End (9 Replies)
Discussion started by: TQ3
9 Replies
