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1. Shell Programming and Scripting
Hello,
I have some tab delimited text data that I am processing. The second column looks like,
NAME;pyrimidine-2,4-diol;cpd;2;line;37
I need to clean this up to just the name,
pyrimidine-2,4-diol
All lines have the same format,
NAME;text;cpd;int;line;int followed by tab
I have tried... (6 Replies)
Discussion started by: LMHmedchem
6 Replies
2. UNIX for Dummies Questions & Answers
Hi guys!
I have quite a lot of files like
all_10001_ct1212307460308.alf*
and I want to get rid of the first number for all at once like:
all_ct1212307460308.alf*
How can I do this in the shell? (12 Replies)
Discussion started by: TimmyTiz
12 Replies
3. Shell Programming and Scripting
Hi,
I have little experience on Shell scripts, I searched the forum but couldn't make out what I want.
I want to rename a set of files to a new file name
a_b_20100101
c_d_20100101
.......................
......................
I want to rename the files to
a_b_20140101... (5 Replies)
Discussion started by: JaisonJ
5 Replies
4. Shell Programming and Scripting
Hi,
Iam using ksh and trying to execute the following syntax to replace one word of the sentence with a new word. But somehow sed is not able to replace the old value with new value. Please let me know where Iam going wrong.
Sample Code :
-->
export line="VORTEX,abcdef"
export... (3 Replies)
Discussion started by: ajithab
3 Replies
5. Shell Programming and Scripting
Hi,
I have two input files as
File1 :
ABC:client1:project1
XYZ:client2-aa:project2
DEF:client4:proj
File2 :
client1:W-170:xx
client2-aa:WT-04:yy
client4:L-005A:zz
Also, array of valid values can be hardcoded like
Output :
ABC:W:project1
XYZ:WT:project2 (1 Reply)
Discussion started by: aa2601
1 Replies
6. Shell Programming and Scripting
Hello!
I'd like to modify custom values in a XML config file between comment tags using bash script.
<feature>
<keyboardshortcut>C-m</keyboardshortcut>
<option1>disabled</option2>
<option2>enabled</option2>
</feature>
<!-- bash script features START -->
<feature>
... (2 Replies)
Discussion started by: prism1
2 Replies
7. Shell Programming and Scripting
Hi
I have a piece of xml that has a pattern like this
<int>159</int><int>30</int>
I want to find this pattern but only substitute the second part of the pattern to {rid1}.
Is that possible in sed ?
Thanks.
---------- Post updated at 12:10 PM ---------- Previous update was at 12:01 PM... (11 Replies)
Discussion started by: vnn
11 Replies
8. Shell Programming and Scripting
Hello,
I have two files, consider that as file1 and file2. Here file1 is the master file.
file1 will contain data like
GS*RA*071000013*102562451P*091130*0520*334052023*X*003050
ST*820*334052023
BPR*C*509.77*C*ACH*CTX*01*071000013*DA*5529085*9000002008**01*071000013*DA*5529085*091130... (8 Replies)
Discussion started by: atlantis
8 Replies
9. UNIX for Dummies Questions & Answers
Ok, I am brand new to UNIX and I am trying to learn a cross between basic script and database use. I had got some ideas off the net on simple ideas for learning UNIX. I am working on creating a simple phone book program that allows myself to enter our employees from work into a phone book text... (0 Replies)
Discussion started by: georgefurbee
0 Replies
10. Shell Programming and Scripting
Hi all
suppose i have a string "abacus sabre", i need to replace occurences 'ab' with 'cd' and i need to store this result into same string and i need to return this result from script to the calling function, where as the string is passed from calling function.
i tried like this
... (1 Reply)
Discussion started by: veerapureddy
1 Replies
UNKNOWN(1) General Commands Manual UNKNOWN(1)
NAME
unknown - identify possible genotypes for unknowns
SYNOPSIS
A program to rapidly identify which genotypes are possible for individuals typed as unknowns in the input pedigree.
unknown [ -cl ]
DESCRIPTION
unknown infers possible genotypes and mating combinations for parents with unknown genotypes for ilink(1), mlink(1) and linkmap(1).
OPTIONS
-c Use conditional allele frequencies.
-l Choose a good set of loop breakers automatically.
RETURN VALUE
0 Successful completion
ERRORS
10 File not found
255 Failure
EXAMPLES
Normally, unknown(1) is run immediately prior to its sister programs, ilink(1), mlink(1) and linkmap(1), like this:
unknown
mlink
FILES
unknown(1) reads the two files pedfile.dat and datafile.dat as its own input and produces various temporary files that are used as input to
the next program. These temporary files are ipedfile.dat, upedfile.dat, speedfile.dat and newspeedfile.dat.
NOTES
unknown(1) is part of the FASTLINK package, which is a re-implementation of the LINKAGE suite of computer tools that help investigate
genetic linkage as first proposed G.M. Lathrop, J.M. Lalouel, C. Julier, and J. Ott.
AUTHORS
Dylan Cooper, Alejandro Schaffer, and Tony Schurtz based on work originally by Jurg Ott, Ph.D, et. al.
This manual page was written by Elizabeth Barham <lizzy@soggytrousers.net> for the Debian GNU/Linux system (but may be used by others).
WORD-WIDE-WEB
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
SEE ALSO
ilink(1), linkmap(1), lodscore(1), mlink(1).
April 15, 2003 UNKNOWN(1)