10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have this fastq file:
@M04961:22:000000000-B5VGJ:1:1101:9280:7106 1:N:0:86
GGGGGGGGGGGGCATGAAAACATACAAACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAAATATCAACCACACCA
+test-1
GGGGGGGGGGGGGGGGGCCGGGGGFF,EDFFGEDFG,@DGGCGGEGGG7DCGGGF68CGFFFGGGG@CGDGFFDFEFEFF:30CGAFFDFEFF8CAF;;8... (10 Replies)
Discussion started by: Xterra
10 Replies
2. UNIX for Advanced & Expert Users
Suppose I have a file which has 1000 columns (5 SHOWN FOR EXAMPLE)
two alphabets are separated by a space and then tab
A A"\t"C C"\t"G G"\t"0 0"\t"T T
A G"\t"C C"\t"G G"\t"A T"\t"0 0
G A"\t"0 0"\t"G C"\t"A A"\t"T C
whenever there is a 0 0 in any column, the output should be printed as
A... (12 Replies)
Discussion started by: rossi
12 Replies
3. Linux
I have a .CSV file when I check for the special characters in the file using the command cat -vet filename.csv, i get very lengthy lines with "^@", "^I^@" and "^@^M" characters in between each alphabet in all of the records. Using the code below file filename.csv I get the output as
I have a... (2 Replies)
Discussion started by: dhruuv369
2 Replies
4. Shell Programming and Scripting
I need a scripting AWK to compare 2 files.
file 1 and 2 are list of keywords
1 is
a
b
c
d
2 is
aa
aaa
b
bb
ccc
d
I want the AWK script to give us the number of times every keyword in file 1 occurs in file 2.
output should be
a 2 (7 Replies)
Discussion started by: anhtt
7 Replies
5. Shell Programming and Scripting
sed -e "s// /g" old.txt > new.txt
While I do know some control characters need to be escaped, can normal characters also be escaped and still work the same way? Basically I do not know all control characters that have a special meaning, for example, ?, ., % have a meaning and have to be escaped... (11 Replies)
Discussion started by: ijustneeda
11 Replies
6. Shell Programming and Scripting
Hello,
I tried with this command,it's working fine,file contains huge data it's not removing the control+M character
dos2unix test1.txt test2.txt
Please help me,is there any other option.
:wall:
Thanks,
Murali
---------- Post updated at 06:41 AM ---------- Previous update... (6 Replies)
Discussion started by: muralikri
6 Replies
7. Shell Programming and Scripting
Friends ,
I need some help in writing a shell script to get the first few characters from a file for all the lines in that file.
Here is sample data inthe file.
9 JACOBS 0175
10 VENDOR_0175
11 JACOBS 0175
100 0175
I want the ouput as
9,10,11,100
It doesn't have any fixed... (7 Replies)
Discussion started by: srini02
7 Replies
8. Shell Programming and Scripting
Hi Experts,
I am working on HP-UX. I am new to shell scripting. I would like to have a shell script which will prefix:
1. "H|" before first row of my file and,
2. "T" for all other rows of the file.
For Example - File before running the script 20100430|4123451810|218.50|TC
20100430 ... (4 Replies)
Discussion started by: phani333
4 Replies
9. Shell Programming and Scripting
hi
I copied a file to unix box from windows.
When i run this file it throws error on every command written in that file.
The reason is that the file contains some \r charecters that came into picture while copying the file.
This could be viewed by using od -c command.
My question is that... (2 Replies)
Discussion started by: infyanurag
2 Replies
10. UNIX for Dummies Questions & Answers
I'm looking to determine if I can use a grep command to read file and rename the file based on the first 3 characters of the data in the file.
An example is:
Read FileA
If the first 3 positions of the data in the file are "ITP", then rename the file as FileA_ITP, else if the first 3... (3 Replies)
Discussion started by: jchappel
3 Replies