10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi all, I have a large fasta (dna sequence) file. I would like to extract a portion of the header as well as the sequence (line below the header).
Input:
Output:
All accession values (the term I want to preserve, which is the string including and directly following "GL") are different, but I... (8 Replies)
Discussion started by: pathunkathunk
8 Replies
2. UNIX for Advanced & Expert Users
Hello All,
I'm trying to extract the lines between two consecutive elements of an array from a file.
My array looks like:
problem_arr=(PRS111 PRS213 PRS234)
j=0
while } ]
do
k=`expr $j + 1`
sed -n "/${problem_arr}/,/${problem_arr}/p" problemid.txt
---some operation goes... (11 Replies)
Discussion started by: InduInduIndu
11 Replies
3. Shell Programming and Scripting
hi
i am trying to extract some specific data out of a text file using regular expressions with shell script
that is using a multiline grep .. and the tool i am using is pcregrep so that i can get compatibility with perl's regular expressions
for a sample data like this, i am trying to grab... (6 Replies)
Discussion started by: vemkiran
6 Replies
4. Programming
how to code with regexp.h
some one can give me instance?
thx (4 Replies)
Discussion started by: AKB48
4 Replies
5. Programming
Hi all,
How am I read a file, find the match regular expression and overwrite to the same files.
open DESTINATION_FILE, "<tmptravl.dat" or die "tmptravl.dat";
open NEW_DESTINATION_FILE, ">new_tmptravl.dat" or die "new_tmptravl.dat";
while (<DESTINATION_FILE>)
{
# print... (1 Reply)
Discussion started by: jessy83
1 Replies
6. Shell Programming and Scripting
Hi all ,
I have a string in my weblog xheader v6-day-2011:xx:yy:zz:qq:qq:ww:ee:rr
My requirement is to lookup the sting v6-day-2011 in this header and if found would like to extract the V6 ip part .
v6-day-2011 is always constant for a ipv6 entry so i would like to extract every thing... (4 Replies)
Discussion started by: jambesh
4 Replies
7. Shell Programming and Scripting
CA_RELEASE has a value of 6. I need to check if that this is a numeric value. if not error.
source $CA_VERSION_DATA
if * ]
then
echo "CA_RELESE $CA_RELEASE is invalid"
exit -1
fi
+ source /etc/ncgl/ca_version_data
++ CA_PRODUCT_ID=samxts
++ CA_RELEASE=6
++ CA_WEEK_NO=7
++... (3 Replies)
Discussion started by: ketkee1985
3 Replies
8. Shell Programming and Scripting
Hi
What is the meaning of this in regular expression $k =~ s/^\s*//;
Plz explain (3 Replies)
Discussion started by: Harikrishna
3 Replies
9. Linux
Regular expression to extract "y" from "abc/x.y.z" (2 Replies)
Discussion started by: rag84dec
2 Replies
10. Shell Programming and Scripting
Is it possible to combine a regular expression with a aritmetical expression? For example, taking a 8-numbers caracter sequece and casting each output of a grep, comparing to a constant.
THX! (2 Replies)
Discussion started by: Z0mby
2 Replies