10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello Guys,
I am pretty new to unix shell scripting where in i need to compare two files which are comma separated files.
So here i go with the file contents
cty_id,grade_val,g_val_2,g_val_3
001,10,20,30
002,,,40
003,100,,10
grade_val,g_val_2,cty_id
10,20,001
41,,002
100,1,003... (4 Replies)
Discussion started by: Master_Mind
4 Replies
2. Shell Programming and Scripting
In the tab-delimited files, I am trying to match
$1,$2,$3,$4,$5 in fiel1 with $1,$2,$3,$4,$5 in fiel2 and create and output file that lists what matches and what was not found (or doesn't match).
However the awk below seems to skip the first line and does not produce the desired output. I think... (2 Replies)
Discussion started by: cmccabe
2 Replies
3. Shell Programming and Scripting
I am trying to output the matches between $1 of file1 to $3 of file2 into a new file match.
I am also wanting to output the mismatches between those same 2 files and fields to two separate new files called missing from file1 and missing from file2. The input files are tab-delimited, but the... (9 Replies)
Discussion started by: cmccabe
9 Replies
4. Shell Programming and Scripting
Hi,
I am trying with the below Perl command to print the first field when the second field matches the given pattern:
perl -lane 'open F, "< myfile"; for $i (<F>) {chomp $i; if ($F =~ /patt$/) {my $f = (split(" ", $i)); print "$f";}} close F' dummy_file
I know I can achieve the same with the... (7 Replies)
Discussion started by: royalibrahim
7 Replies
5. Shell Programming and Scripting
Hi,
A perl newbie here so pretty sure it's something simple. Trying to figure out how to count matches with perl pattern matching. The following script opens a text data file and finds lines containing
"PORT:" and I'd like to count how many of these are found.
Any ideas?
open(LOG,"<... (3 Replies)
Discussion started by: hdefjunkie
3 Replies
6. UNIX for Advanced & Expert Users
Hi
I am spooling the table values in file in unix ,but the problem is date format in table 'dd/mm/yyyy' ,when strong into file 'dd-mon-yyyy'.I want the same format to loaded into files also.Any idea.
$ORACLE_HOME/bin/sqlplus -S "$db"<<! | tee -a >$INFA_HOME/server/infa_shared/CTRL.log
... (1 Reply)
Discussion started by: akil
1 Replies
7. Shell Programming and Scripting
Can we please modify this perl one-liner to print lines between pattern1 and pattern2 in a file?
Currently it prints lines till pattern2. (4 Replies)
Discussion started by: anand_bh
4 Replies
8. Shell Programming and Scripting
#!/usr/bin/perl
use Shell;
open THEFILE, "C:\galileo_integration.txt" || die "Couldnt open the file!";
@wholeThing = <THEFILE>;
close THEFILE;
foreach $line (@wholeThing){
if ($line =~ m/\\0$/){
@nextThing = $line;
if ($line =~ s/\\0/\\LATEST/g){
@otherThing =... (2 Replies)
Discussion started by: nmattam
2 Replies
9. Shell Programming and Scripting
pls help me on this... and im really sorry because i really don't know where to start here...
FILE1
ABC DEF 10 2
DEF GHI 11 3
GHI JKL 12 5
JKL MNO 13 7
MNO PQR 14 5
requirements:
1. The third string should only be 10 or 12
2. The fourth string should only be 2 or 3
3. Prinnt... (1 Reply)
Discussion started by: kingpeejay
1 Replies
10. Shell Programming and Scripting
Hello all
i have this simple loop that gets me every time the match of "<#" in my string
something like that :
my $str ="gggg<#nnnnn#>kkkk<#ssss#>llllll";
while($str =~m/<#/g){
print pos($str);
}
but now i like to get another pos in the same loop iteration , i will like to get the... (1 Reply)
Discussion started by: umen
1 Replies
Bio::Search::HSP::PSLHSP(3pm) User Contributed Perl Documentation Bio::Search::HSP::PSLHSP(3pm)
NAME
Bio::Search::HSP::PSLHSP - A HSP for PSL output
SYNOPSIS
# get a PSLHSP somehow (SearchIO::psl)
DESCRIPTION
This is a HSP for PSL output so we can handle seq_inds differently.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Search::HSP::PSLHSP->new();
Function: Builds a new Bio::Search::HSP::PSLHSP object
Returns : an instance of Bio::Search::HSP::PSLHSP
Args : -gapblocks => arrayref of gap locations which are [start,length]
of gaps
gap_blocks
Title : gap_blocks
Usage : $obj->gap_blocks($seqtype,$blocks)
Function: Get/Set the gap blocks
Returns : value of gap_blocks (a scalar)
Args : sequence type - 'query' or 'hit'
blocks - arrayref of block start,length
mismatches
Title : mismatches
Usage : $obj->mismatches($newval)
Function: Get/Set the number of mismatches
Returns : value of mismatches (a scalar)
Args : on set, new value (a scalar or undef, optional)
perl v5.14.2 2012-03-02 Bio::Search::HSP::PSLHSP(3pm)