10 More Discussions You Might Find Interesting
1. Programming
Dear linux users
I was running around of 200 djob for a Blastp search in a cluster. All my input files were protein fasta file (prot.fna.1, prot.fna.2 ...prot.fna.200). The output of each individual slurm job is located in a corresponding file ending with *test (prot.fna.1.test,... (10 Replies)
Discussion started by: Dieunel
10 Replies
2. UNIX for Beginners Questions & Answers
Hi,
I am running the following:
PASS="username/password"
sqlplus -s << EOF | grep -v "^$"
$PASS
set feedback off
set heading off
set termout off
select name from v\$database ;
exit
EOF
Which gives
ERROR:
ORA-28002: the password will expire within 5 days
PSMP1 (1 Reply)
Discussion started by: newbie_01
1 Replies
3. Shell Programming and Scripting
Hi all,
Saying we have two files:
1. A "Reference File" whose content is "Variable Name": "Variable Value"
2. A "Model File" whose content is a model program in which I want to substitute "VariableName" with their respective value to produce a third file "Program File" which would be a... (4 Replies)
Discussion started by: dae
4 Replies
4. Shell Programming and Scripting
OSX
I have been grinding my teeth on a portion of code. I am building a bash script that edits a html email template. In the template, I have place holders for SED (or whatever program is appropriate) to use as anchors for find and replace, with user defined corresponding html code. The HTML code... (3 Replies)
Discussion started by: sudo
3 Replies
5. Shell Programming and Scripting
Experts Good day,
I want to filter multiple lines of same error of same day , to only 1 error of each day, the first line from the log.
Here is the file:
May 26 11:29:19 cmihpx02 vmunix: NFS write failed for server cmiauxe1: error 5 (RPC: Timed out)
May 26 11:29:19 cmihpx02 vmunix: NFS... (4 Replies)
Discussion started by: rveri
4 Replies
6. Shell Programming and Scripting
Hello I am hoping you may help.
I am not sure how to go about this exactly, I know the tools but not sure how to make them work together.
I have two SED commands that I would like to run in a shell script. I would like to take
the manual input of a user (types in when prompted) to be used... (4 Replies)
Discussion started by: lostincashe
4 Replies
7. Shell Programming and Scripting
Hi,
I am trying to get lines between the last occurrences of two patterns. I have files that have several occurrences of “Standard” and “Visual”. I will like to get the lines between “Standard” and “Visual” but I only want to retain only the last one e.g.
Standard
Some words
Some words
Some... (4 Replies)
Discussion started by: damanidada
4 Replies
8. UNIX for Dummies Questions & Answers
hi,
I have a directory "test" under which there are 3 files a.txt,b.txt and c.txt.
I need to rename those files to a.pl,b.pl and c.pl respectively.
is it possible to achieve this in a sed or awk one liner?
i have searched but many of them are scripts.
I need to do this in a one liner.
I... (2 Replies)
Discussion started by: pandeesh
2 Replies
9. UNIX for Dummies Questions & Answers
Hi guys,
say I have a few files in a directory (58 text files or somthing)
each one contains mulitple strings that I wish to replace with other strings
so in these 58 files I'm looking for say the following strings:
JAM (replace with BUTTER)
BREAD (replace with CRACKER)
SCOOP (replace... (19 Replies)
Discussion started by: rich@ardz
19 Replies
10. Shell Programming and Scripting
I'm attempting to insert multiple lines before a line matching a given search pattern. These lines are generated in a separate function and can either be piped in as stdout or read from a temporary file.
I've been able to insert the lines from a file after the pattern using:
sed -i '/pattern/... (2 Replies)
Discussion started by: zksailor534
2 Replies