10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Dears experts
i have UNIX file that contain 4 million lines , i need to extract all lines that have entiries saved in VI file , i have below comand but it takes tooooo long time :
for i in `cat file1.csv`; do cat dump | grep -i $i >> file2.csv; done
where :
file1.csv = VI file that... (12 Replies)
Discussion started by: is2_egypt
12 Replies
2. Shell Programming and Scripting
Hi all;
Here is my file which contains a list of files (recent versions of files are in red). This file is dynamic, files versions can change at any time (versions can increment)
filename
-------------------------------------------------------
... (8 Replies)
Discussion started by: chercheur111
8 Replies
3. Shell Programming and Scripting
Hallo,
I need to extract distinct sequence of letters for example from 136 to 193
Files are quite big, so I would prefer not to use "fold -w1"
Thank you very much
Input file look like this:
1 cttttacctt catgtgtttt tgcagatatt tgttcataat aacatcttct ttttaagtta
61 ttaaaatctt... (4 Replies)
Discussion started by: kamcamonty
4 Replies
4. Shell Programming and Scripting
Hi,
I want to match the sequence id (sub-string of line starting with '>' and extract the information upto next '>' line ). Please help .
input
> fefrwefrwef X900
AGAGGGAATTGG
AGGGGCCTGGAG
GGTTCTCTTC
> fefrwefrwef X932
AGAGGGAATTGG
AGGAGGTGGAG
GGTTCTCTTC
> fefrwefrwef X937... (2 Replies)
Discussion started by: ritakadm
2 Replies
5. Shell Programming and Scripting
Hi guys
I have a several thousands line file in the following format:
n817
--------------------------------------------------
n842
--------------------------------------------------
n877
--------------------------------------------------
n513
/bb/data/rmt2db.lrl:JBSKDB 31915 75... (4 Replies)
Discussion started by: aoussenko
4 Replies
6. Shell Programming and Scripting
Hi all,
I have a file with many records with information as given below
ID A16L2_HUMAN Reviewed; 619 AA.
AC Q8NAA4; A5PL30; B2RPK5; Q658V4; Q6PID3; Q8NBG0;
DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot.
DT 20-MAY-2008, sequence version 2.
DT ... (1 Reply)
Discussion started by: kaav06
1 Replies
7. Shell Programming and Scripting
hi,
i have two files.
file1.sh
echo "unix"
echo "linux"
file2.sh
echo "unix linux forums"
now the output i need is
$./file2.sh
unix linux forums (3 Replies)
Discussion started by: snreddy_gopu
3 Replies
8. Shell Programming and Scripting
I have two files
file A which have a number in every row and file B which contains few hundred thousand rows with about 300 characters in each row (csv)
What I need is to extract whole rows from B file (only these which numbers are indicated in A file)
I also need to use cygwin.
Any... (7 Replies)
Discussion started by: gunio
7 Replies
9. Shell Programming and Scripting
Hi,
I have an one-line file consisting of a sequence of 660 letters. I would like to extract 9-letter blocks iteratively:
ASDFGHJKLQWERTYUIOPZXCVBNM
first block: ASDFGHJKL
1nd block: SDFGHJKLQ
What I have so far only gives me the first block, can anyone please explain why?
cat... (7 Replies)
Discussion started by: solli
7 Replies
10. Shell Programming and Scripting
Dear Collegues
I have to extract Some pattern from raw text file using perl
The input will be raw text.
Pattern to get - Sequence of Capital Letter Words ( e.g. he is working in Center for Perl Studies. He will come tomorrow...) from thos I have to extract sequences like "Center for Perl... (5 Replies)
Discussion started by: jaganadh
5 Replies
