Shell Programming and Scripting

for z in /home/cmccabe/tmp/*.zip; do ## start loop
    unzip "$z";  ## unzip all .zip files
    mv "$(unzip -Z1 $z)" "${z%%_*}";  ## grab prefix before _ and add to the extraced .zip
rm "$z"  ## remove original .zip
done  ## end processing

19-0000-LastName-FirstName_v1_c91a684a-0a9c-4632-9b60-91f0d337f51d.zip --- top level ---
     Variants   --- folder to be extracted ---
19-0002-L-F_v1_d870b844-b72e-49c4-89c4-471f90dd8724.zip   --- top level --
     Variants   --- folder to be extracted ---

     19-0000-LastName-FirstName-Variants   --- extracted folder w/ prefix ---
     19-0002-L-F-Variants   --- extracted folder w/ prefix ---

 inflating: Variants/19-0000-LastName-FirstName_v1/19-0000-LastName-FirstName_v1_Non-Filtered_2019-03-21_08:12:52-xxxx.tsv

target_dir=/data
for zipfile in /home/cmccabe/tmp/*.zip
do
   workdir=$(mktemp -d "${target_dir}"/tmp.XXXXX)                          # Creates the temporary directory and catches the name
   unzip -d "${workdir}" "${zipfile}"
   prefix="${zipfile%%_*}"                                                     # Grab the interesting bit for this input file
   for extracted_file in ${workdir}                                     
   do
      mv "${extracted_file}" "${target_dir}/${prefix}"                              # Move to desired location and rename in one step
   done
done