Attach filename to wc results on massive number of files


 
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Old 03-14-2019
Attach filename to wc results on massive number of files

Hello,
I have massive number of big files that needed to be counted for the total number of lines (> 100x millions) each. I want the file name attached to the count results so that they are aligned nicely matching name and counts.
I could do each file at a time, which will take hours to finish, so that the jobs were sent to background as I have multiple cores available to get the job done quickly. The problem with my script is the "echo -n $f" "; always accomplishes first, and the ${f}_R1.fq.gz | wc -l part is behind too much and the result was not aligned as expected.

Here is my code:
Code:
for f in $(cat ${LIST1}); do 
echo -n $f" "  >> raw_reads_count.table1; 
zcat ${f}_R1.fq.gz | wc -l >> raw_reads_count.table1 &      #This is the part
 done
------------------------------------------------------------------------------------------------------
messed-up output:
a      
bb    
ccc   
xyz 
267234214
777234211
937214233
1027254258
------------------------------------------------------------------------------------------------------
 Expected output:
a    267234214
bb   937214233
ccc  777234211
xyz 1027254258

How should I improve my script to get what is expected? Thanks a lot!
 
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CHGRP(3)								 1								  CHGRP(3)

chgrp - Changes file group

SYNOPSIS
bool chgrp (string $filename, mixed $group) DESCRIPTION
Attempts to change the group of the file $filename to $group. Only the superuser may change the group of a file arbitrarily; other users may change the group of a file to any group of which that user is a member. PARAMETERS
o $filename - Path to the file. o $group - A group name or number. RETURN VALUES
Returns TRUE on success or FALSE on failure. EXAMPLES
Example #1 Changing a file's group <?php $filename = 'shared_file.txt'; $format = "%s's Group ID @ %s: %d "; printf($format, $filename, date('r'), filegroup($filename)); chgrp($filename, 8); clearstatcache(); // do not cache filegroup() results printf($format, $filename, date('r'), filegroup($filename)); ?> NOTES
Note This function will not work on remote files as the file to be examined must be accessible via the server's filesystem. Note When safe mode is enabled, PHP checks whether the files or directories being operated upon have the same UID (owner) as the script that is being executed. SEE ALSO
chown(3), chmod(3). PHP Documentation Group CHGRP(3)