10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi,
So awk is driving me crazy on this one. I have searched everywhere and read man, docs and every related post Google can find and still no luck. The actual files I need to run this on are sensitive in nature, but it is the same thing as if I needed to calculate weighted grades for multiple... (15 Replies)
Discussion started by: cotilloe
15 Replies
2. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
3. Shell Programming and Scripting
I am trying to output a tab-delimited result that uses the data from a tab-delimited file to combine and subtract specific lines.
If $4 matches in each line then the first matching sequential $6 value is added to $2, unless the value is 1, then the original $2 is used (like in the case of line... (3 Replies)
Discussion started by: cmccabe
3 Replies
4. Shell Programming and Scripting
In the tab-delimeted input file below I am trying to use awk to update the value in $2 if TYPE=ins in bold, by adding the value of
HRUN= in italics. In the below since in line 1 TYPE=ins the 117282541 value in $2 has 6 added because that is the value of HRUN=.
Hopefully the awk is a start but I... (2 Replies)
Discussion started by: cmccabe
2 Replies
5. Shell Programming and Scripting
Hi Folks,
I have a file with fields as follows which has last field in multiple lines. I would like to combine a line which has three fields with single field line for as shown in expected output. Please help.
INPUT
hname01 windows appnamec1eda_p1, ... (5 Replies)
Discussion started by: shunya
5 Replies
6. Shell Programming and Scripting
Trying to output a result that uses the data from file to combine and subtract specific lines. If $4 matches in each line then the last $6 value is added to $2 and that becomes the new$3. Each matching line in combined into one with $1 then the original $2 then the new$3 then $5. For the cases... (4 Replies)
Discussion started by: cmccabe
4 Replies
7. Shell Programming and Scripting
I am trying to parse the input in awk to include the |gc= in $4 but am not able to. The below is close:
awk so far:
awk '{sub(/\|]+]++/, ""); print }' input.txt Input
chr1 955543 955763 AGRN-6|pr=2|gc=75 0 +
chr1 957571 957852 AGRN-7|pr=3|gc=61.2 0 +
chr1 970621 ... (7 Replies)
Discussion started by: cmccabe
7 Replies
8. Shell Programming and Scripting
Hi,
I have a huge file that has data something like shown below:
huge_file.txt
start regexp
Name=Name1
Title=Analyst
Address=Address1
Department=Finance
end regexp
some text
some text
start regexp
Name=Name2
Title=Controller
Address=Address2
Department=Finance
end regexp (7 Replies)
Discussion started by: r3d3
7 Replies
9. Shell Programming and Scripting
Hi, all
I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes.
sample input:
for this line, 5 fields are supposed to be extracted, they... (8 Replies)
Discussion started by: kevintse
8 Replies
10. UNIX for Dummies Questions & Answers
So, I need to do some summing. I have an Apache log file with the following as a typical line:
127.0.0.1 - frank "GET /apache_pb.gif HTTP/1.0" 200 2326
Now, what I'd like to do is a per-minute sum. So, I can have awk tell me the individual minutes, preserving the dates(since this is a... (7 Replies)
Discussion started by: treesloth
7 Replies