10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi,
So awk is driving me crazy on this one. I have searched everywhere and read man, docs and every related post Google can find and still no luck. The actual files I need to run this on are sensitive in nature, but it is the same thing as if I needed to calculate weighted grades for multiple... (15 Replies)
Discussion started by: cotilloe
15 Replies
2. UNIX for Beginners Questions & Answers
For some reason I am having difficulty performing what should be a fairly easy task. I would like to print lines of a file that have a unique value in the first field. For example, I have a large data-set with the following excerpt:
PS003,001 MZMWR/ L-DWD// *
PS003,001... (4 Replies)
Discussion started by: jvoot
4 Replies
3. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
4. Shell Programming and Scripting
I am trying to output a tab-delimited result that uses the data from a tab-delimited file to combine and subtract specific lines.
If $4 matches in each line then the first matching sequential $6 value is added to $2, unless the value is 1, then the original $2 is used (like in the case of line... (3 Replies)
Discussion started by: cmccabe
3 Replies
5. Shell Programming and Scripting
In the tab-delimeted input file below I am trying to use awk to update the value in $2 if TYPE=ins in bold, by adding the value of
HRUN= in italics. In the below since in line 1 TYPE=ins the 117282541 value in $2 has 6 added because that is the value of HRUN=.
Hopefully the awk is a start but I... (2 Replies)
Discussion started by: cmccabe
2 Replies
6. Shell Programming and Scripting
The below awk uses $3 and $4 in search as the min and max, then takes each $2 value in lookup and compares it. If the value in lookupfalls within the range in searchthen it prints the entire line in lookup/ICODE]. What I can't seem to figure out is how to print the matching $5 from search on that... (4 Replies)
Discussion started by: cmccabe
4 Replies
7. Shell Programming and Scripting
I have file which contains gene lines something like this
Transcript Name GO
POPTR_0016s06290.1 98654
POPTR_2158s00200.1 11324
POPTR_0004s22390.1 12897
POPTR_0001s11490.1
POPTR_0016s13950.1 14532
POPTR_0015s05840.1 13455
POPTR_0013s06470.1 12344... (6 Replies)
Discussion started by: shen
6 Replies
8. Shell Programming and Scripting
Can some one provide me a shell script.
I have file with many columns and many rows. need to sort the first column and then remove the duplicates records if exists.. finally print the full data with first coulm as unique.
Sort BASED ON FIRST FIELD and remove the duplicates if exists... (2 Replies)
Discussion started by: tuffEnuff
2 Replies
9. UNIX for Dummies Questions & Answers
Hi,
I'm trying to print every line from first field to the fourth from a file containing more.
$ cat input
a b c d e f g
a b c d e f gI'm trying
awk '{for (i=1; i <= NF-3; i++) print $i}' awkTest.datbut it printsa
b
c
d
a
b
c
dSo, I easily guess I'm wrong. :)
Of course, I want:a b... (5 Replies)
Discussion started by: daPeach
5 Replies
10. UNIX for Dummies Questions & Answers
So, I need to do some summing. I have an Apache log file with the following as a typical line:
127.0.0.1 - frank "GET /apache_pb.gif HTTP/1.0" 200 2326
Now, what I'd like to do is a per-minute sum. So, I can have awk tell me the individual minutes, preserving the dates(since this is a... (7 Replies)
Discussion started by: treesloth
7 Replies