10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I need to print field and the next one if field matches 'patternA' and also print 'patternB' fields.
echo "some output" | awk '{for(i=1;i<=NF;i++){if($i ~ /patternA/){print $i, $(i+1)}elif($i ~ /patternB/){print $i}}}'
This code returnes me 'syntax error'. Pls advise how to do properly. (2 Replies)
Discussion started by: urello
2 Replies
2. Shell Programming and Scripting
In the awk below I am trying to use the file1 as a match to file2. In file2 the contents of $5,&6,and $7 (always tab-delimited) and are copied to the output under the header Quality metrics. The below executes but the output is empty. I have added comments to help and show my thinking. Thank you... (0 Replies)
Discussion started by: cmccabe
0 Replies
3. UNIX for Beginners Questions & Answers
I've written an awk script to compare two fields in two different files and then print portions of each file on the same line when matched. It works reasonably well, but every now and again, I notice some errors and cannot seem to figure out what the issue may be and am turning to you for help.
... (2 Replies)
Discussion started by: jvoot
2 Replies
4. Shell Programming and Scripting
Hi
I need to egrep patterns in a file and limit number of matches to print for each matched pattern.
-m10 option is not working out in my sun solaris 5.10
Please guide me the options to achieve.
if i do head -10 , i wont be getting all pattern match results as output since for a... (10 Replies)
Discussion started by: ananan
10 Replies
5. Shell Programming and Scripting
Trying to use awk to match the contents of each line in file1 with $5 in file2. Both files are tab-delimited and there may be a space or special character in the name being matched in file2, for example in file1 the name is BRCA1 but in file2 the name is BRCA 1 or in file1 name is BCR but in file2... (6 Replies)
Discussion started by: cmccabe
6 Replies
6. Shell Programming and Scripting
Trying to use awk to find a keyword and return the matches in the row, but also $1 and $2, which are the unique id's, but they only appear once. Thank you :).
file
name 31 Index Chromosomal Position Gene Inheritance
122 2106725 TSC2 AD
124 2115481 TSC2 AD
121 2105400 TSC2 AD... (6 Replies)
Discussion started by: cmccabe
6 Replies
7. Shell Programming and Scripting
Hi,
i have been trying to extract multiple lines based on two different patterns as below:-
file1
@jkm|kdo|aas012|192.2.3.1 blablbalablablkabblablabla
sjfdsakfjladfjefhaghfagfkafagkjsghfalhfk
fhajkhfadjkhfalhflaffajkgfajkghfajkhgfkf
jahfjkhflkhalfdhfwearhahfl
@jkm|sdf|wud08q|168.2.1.3... (8 Replies)
Discussion started by: redse171
8 Replies
8. Shell Programming and Scripting
Hello everyone,
Maybe somebody could help me with an awk script.
I have this input (field separator is comma ","):
547894982,M|N|J,U|Q|P,98,101,0,1,1
234900027,M|N|J,U|Q|P,98,101,0,1,1
234900023,M|N|J,U|Q|P,98,54,3,1,1
234900028,M|H|J,S|Q|P,98,101,0,1,1
234900030,M|N|J,U|F|P,98,101,0,1,1... (2 Replies)
Discussion started by: Ophiuchus
2 Replies
9. Shell Programming and Scripting
Dear all,
I need to search multiple patterns and then I need to print their respective next lines. For an example, in the below table, I will look for 3 different patterns :
1) # ATC_Codes:
2) # Generic_Name:
3) # Drug_Target_1_Gene_Name:
#BEGIN_DRUGCARD DB00001
# AHFS_Codes:... (3 Replies)
Discussion started by: AshwaniSharma09
3 Replies
10. Shell Programming and Scripting
Hi,
I have a text file as follows:
11:38:11.054 run1_rdseq avg_2-5 999988.0000 1024.0000
11:50:52.053 run3_rdrand 999988.0000 1135.0 128.0417
11:53:18.050 run4_wrrand avg_2-5 999988.0000 8180.5833
11:55:42.051 run4_wrrand avg_2-5 999988.0000 213.8333
11:55:06.053... (2 Replies)
Discussion started by: annazpereira
2 Replies