Code:
chr12 12006495 ETV6-NTRK3.E4N15.COSF823.1_1 G G]chr15:88483984] . PASS SVTYPE=Fusion;READ_COUNT=1868;GENE_NAME=ETV6;EXON_NUM=4;RPM=1.5825e-09;NORM_COUNT=0.001582480886121524;ANNOTATION=COSF823;FUNC=[{'gene':'ETV6','exon':'4','oncomineGeneClass':'Gain-of-Function','oncomineVariantClass':'Fusion'}] GT:GQ ./.:.
chr15 88483984 ETV6-NTRK3.E4N15.COSF823.1_2 T ]chr12:12006495]T . PASS SVTYPE=Fusion;READ_COUNT=1868;GENE_NAME=NTRK3;EXON_NUM=15;RPM=1.5825e-09;NORM_COUNT=0.001582480886121524;ANNOTATION=COSF823;FUNC=[{'gene':'NTRK3','exon':'15','oncomineGeneClass':'Gain-of-Function','oncomineVariantClass':'Fusion'}] GT:GQ ./.:.
chr12 12022903 ETV6-NTRK3.E5N15.COSF571.1_1 G G]chr15:88483984] . PASS SVTYPE=Fusion;READ_COUNT=414833;GENE_NAME=ETV6;EXON_NUM=5;RPM=3.5143e-07;NORM_COUNT=0.3514268166126607;ANNOTATION=COSF571;FUNC=[{'gene':'ETV6','exon':'5','oncomineGeneClass':'Gain-of-Function','oncomineVariantClass':'Fusion'}] GT:GQ ./.:.
chr15 88483984 ETV6-NTRK3.E5N15.COSF571.1_2 T ]chr12:12022903]T . PASS SVTYPE=Fusion;READ_COUNT=414833;GENE_NAME=NTRK3;EXON_NUM=15;RPM=3.5143e-07;NORM_COUNT=0.3514268166126607;ANNOTATION=COSF571;FUNC=[{'gene':'NTRK3','exon':'15','oncomineGeneClass':'Gain-of-Function','oncomineVariantClass':'Fusion'}] GT:GQ ./.:.
chr17 7577108 COSM10749;COSM43737 C A,T 149.594 PASS AF=0.0830415,0.0;AO=372,2;DP=4420;FAO=166,0;FDP=1999;FR=.,.,REALIGNEDx0.0865;FRO=1833;FSAF=82,0;FSAR=84,0;FSRF=952;FSRR=881;FWDB=0.0072184,-0.0207142;FXX=4.99998E-4;HRUN=1,1;LEN=1,1;MLLD=293.795,80.5366;OALT=A,T;OID=COSM10749,COSM43737;OMAPALT=A,T;OPOS=7577108,7577108;OREF=C,C;PB=.,.;PBP=.,.;QD=0.299338;RBI=0.00721997,0.02565;REFB=1.40155E-4,-7.81395E-4;REVB=1.50579E-4,0.0151276;RO=4043;SAF=187,1;SAR=185,1;SRF=2118;SRR=1925;SSEN=0,0;SSEP=0,0;SSSB=-0.0251826,-5.12306E-4;STB=0.52327,0.5;STBP=0.541,1.0;TYPE=snp,snp;VARB=-0.00153404,0.0;HS;FUNC=[{'origPos':'7577108','origRef':'C','normalizedRef':'C','gene':'TP53','normalizedPos':'7577108','normalizedAlt':'A','polyphen':'1.0','gt':'pos','codon':'TTT','coding':'c.830G>T','sift':'0.0','grantham':'205.0','transcript':'NM_000546.5','function':'missense','protein':'p.Cys277Phe','location':'exonic','origAlt':'A','exon':'8','oncomineGeneClass':'Loss-of-Function','oncomineVariantClass':'Hotspot'}] GT:GQ:DP:FDP:RO:FRO:AO:FAO:AF:SAR:SAF:SRF:SRR:FSAR:FSAF:FSRF:FSRR:QT 0/1:149:4420:1999:4043:1833:372,2:166,0:0.0830415,0.0:185,1:187,1:2118:1925:84,0:82,0:952:881:1
chr10 89624278 . G T 62.8836 PASS AF=0.0785393;AO=297;DP=4155;FAO=157;FDP=1999;FR=.;FRO=1842;FSAF=77;FSAR=80;FSRF=908;FSRR=934;FWDB=0.0113997;FXX=4.99998E-4;HRUN=1;LEN=1;MLLD=117.237;OALT=T;OID=.;OMAPALT=T;OPOS=89624278;OREF=G;PB=.;PBP=.;QD=0.12583;RBI=0.040843;REFB=5.39678E-4;REVB=-0.0392199;RO=3844;SAF=150;SAR=147;SRF=1936;SRR=1908;SSEN=0;SSEP=0;SSSB=0.00159791;STB=0.502301;STBP=0.96;TYPE=snp;VARB=-0.00676678;FUNC=[{'origPos':'89624278','origRef':'G','normalizedRef':'G','gene':'PTEN','normalizedPos':'89624278','normalizedAlt':'T','gt':'pos','codon':'TAG','coding':'c.52G>T','transcript':'NM_000314.4','function':'nonsense','protein':'p.Glu18Ter','location':'exonic','origAlt':'T','exon':'1'}] GT:GQ:DP:FDP:RO:FRO:AO:FAO:AF:SAR:SAF:SRF:SRR:FSAR:FSAF:FSRF:FSRR:QT 0/1:62:4155:1999:3844:1842:297:157:0.0785393:147:150:1936:1908:80:77:908:934:1