10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hey everyone,
I am trying to extract column values from a column in a tab-delimited text file and overlay them in a 2nd tab-delimited text file using a V-lookup type script in Unix bash.
These are the 1st few rows of the 1st input file IN1:
rsid chromosome position allele1 ... (10 Replies)
Discussion started by: Geneanalyst
10 Replies
2. Shell Programming and Scripting
The bash bash below extracts the oldest folder from a directory and stores it in filename
That result will match a line in bold in input. In the matching line there is an_xxx digit in italics that
(once the leading zero is removed) will match a line in link. That is the lint to print in output.... (2 Replies)
Discussion started by: cmccabe
2 Replies
3. Shell Programming and Scripting
As part of a bash the below line strips off a numerical prefix from directory 1 to search for in directory 2.
for file in /home/cmccabe/Desktop/comparison/missing/*.txt
do
file1=${file##*/} # Strip off directory
getprefix=${file1%%_*.txt}
... (5 Replies)
Discussion started by: cmccabe
5 Replies
4. Shell Programming and Scripting
In the below portion of a bash script the user selects a file from a directory.
select file in $(cd /home/cmccabe/Desktop/NGS/API/5-14-2016/bedtools;ls);do break;done
files in directory
123_base_counts.txt
456_base_counts.txt
789_base_counts.txt
second portion of bash currently (user... (4 Replies)
Discussion started by: cmccabe
4 Replies
5. Shell Programming and Scripting
Hi I have a problem, I am attempting to write a bash script that goes through a file and can determine how many characters are at a set point in a line starting with QTY+113:100:PCE, If it detects 3 digits (number in bold) then pad it out with 12 zero's
If there are only two digits then pad it... (8 Replies)
Discussion started by: firefox2k2
8 Replies
6. Shell Programming and Scripting
Hi. I need assistance with the replacing of text into a specific file via a bash script.
My bash script, once run, currently provides a menu of computer names to choose.The script copies onto my system various files, depending what computer was selected in the menu.This is working OK.
Now, I... (1 Reply)
Discussion started by: jonesn2000
1 Replies
7. Shell Programming and Scripting
Hi there, im sure this is really simple but i have some strings like this
e1000g123001
e1000g0
nge11101
nge3and i want to create two variables ($DRIVER and $INSTANCE). the first one containing the alpha characters that make up the first part of the string, e.g. e1000g or nge and the... (9 Replies)
Discussion started by: rethink
9 Replies
8. UNIX Desktop Questions & Answers
I have a file with hundreds of records and I need to find those records that have three digits at the beginning and the same three digits at the end.
$GREP '\(\)\(\)\(\)\3\2\1'I
believe this is part of the script but I am not sure how to compare these 3 digits with the 3 digits at the end of... (2 Replies)
Discussion started by: bartsimpsong
2 Replies
9. UNIX for Advanced & Expert Users
Write a quick shell snippet to find all of the IPV4 IP addresses
in any and all of the files under /var/lib/output/*, ignoring
whatever else may be in those files. Perform a reverse lookup on
each, and format the output neatly, like "IP=192.168.0.1,
... (0 Replies)
Discussion started by: choco4202002
0 Replies
10. Shell Programming and Scripting
Dear all,
I have two files like below.
file1
======
x y
==== ===
123 test1
124 test2
125 test3
file2
=======
a b c
=== === ====
123 ... (2 Replies)
Discussion started by: Nayanajith
2 Replies
SYSPROFILE(8) System Manager's Manual SYSPROFILE(8)
NAME
sysprofile - modular centralized shell configuration
DESCRIPTION
sysprofile is a generic approach to configure shell settings in a modular and centralized way mostly aimed at avoiding work for lazy sysad-
mins. It has only been tested to work with the bash shell.
It basically consists of the small /etc/sysprofile shell script which invokes other small shell scripts having a .bash suffix which are
contained in the /etc/sysprofile.d/ directory. The system administrator can drop in any script he wants without any naming convention
other than that the scripts need to have a .bash suffix to enable automagic sourcing by /etc/sysprofile.
This mechanism is set up by inserting a small shell routine into /etc/profile for login shells and optionally into /etc/bashrc and/or
/etc/bash.bashrc for non-login shells from where the actual /etc/sysprofile script is invoked:
if [ -f /etc/sysprofile ]; then
. /etc/sysprofile
fi
For using "sysprofile" under X11, one can source it in a similar way from /etc/X11/Xsession or your X display manager's Xsession file to
provide the same shell environment as under the console in X11. See the example files in /usr/share/doc/sysprofile/ for illustration.
For usage of terminal emulators with a non-login bash shell under X11, take care to enable sysprofile via /etc/bash.bashrc. If not set
this way, your terminal emulators won't come up with the environment defined by the scripts in /etc/sysprofile.d/.
Users not wanting /etc/sysprofile to be sourced for their environment can easily disable it's automatic mechanism. It can be disabled by
simply creating an empty file called $HOME/.nosysprofile in the user's home directory using e.g. the touch(1) command.
Any single configuration file in /etc/sysprofile.d/ can be overridden by any user by creating a private $HOME/.sysprofile.d/ directory
which may contain a user's own version of any configuration file to be sourced instead of the system default. It's names have just to
match exactly the system's default /etc/sysprofile.d/ configuration files. Empty versions of these files contained in the $HOME/.syspro-
file.d/ directory automatically disable sourcing of the system wide version.
Naturally, users can add and include their own private script inventions to be automagically executed by /etc/sysprofile at login time.
OPTIONS
There are no options other than those dictated by shell conventions. Anything is defined within the configuration scripts themselves.
SEE ALSO
The README files and configuration examples contained in /etc/sysprofile.d/ and the manual pages bash(1), xdm(1x), xdm.options(5), and
wdm(1x). Recommended further reading is everything related with shell programming.
If you need a similar mechanism for executing code at logout time check out the related package syslogout(8) which is a very close compan-
ion to sysprofile.
BUGS
sysprofile in its current form is mainly restricted to bash(1) syntax. In fact it is actually a rather embarrassing quick and dirty hack
than anything else - but it works. It serves the practical need to enable a centralized bash configuration until something better
becomes available. Your constructive criticism in making this into something better" is very welcome. Before i forget to mention it: we
take patches... ;-)
AUTHOR
sysprofile was developed by Paul Seelig <pseelig@debian.org> specifically for the Debian GNU/Linux system. Feel free to port it to and use
it anywhere else under the conditions of either the GNU public license or the BSD license or both. Better yet, please help to make it into
something more worthwhile than it currently is.
SYSPROFILE(8)