10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
I will start with an example of what I'm trying to do and then describe how I am approaching the issue.
File
PS028,005
Lexeme HRS # M #
PhraseType 1(1:1) 7(7)
PhraseLab 501 503
ClauseType ZYq0
PS028,005
Lexeme W # L> # BNH # M #... (17 Replies)
Discussion started by: jvoot
17 Replies
2. Shell Programming and Scripting
The awk below does put in VUS in the 9th field but I can not seem to skip the header then add the VUS. I tried to incorporate NR >=2 and NR > 1 with no luck. Thank you :).
input
Chr Start End Ref Alt Func.refGene PopFreqMax CLINSIG Classification
chr1 43395635 ... (5 Replies)
Discussion started by: cmccabe
5 Replies
3. Shell Programming and Scripting
I am trying to add a condition to the below perl that will capture the GTtag and place a specific string in the last field of each line. The problem is that the GT value used is not right after the tag rather it is a few fields away. The values should always be 0/1 or 1/2 and are in bold in the... (12 Replies)
Discussion started by: cmccabe
12 Replies
4. Shell Programming and Scripting
I have a large dataset with following structure;
C 0001 Carbon
D SAR001 methane
D SAR002 ethane
D SAR003 propane
D SAR004 butane
D SAR005 pentane
C 0002 Hydrogen
C 0003 Nitrogen
C 0004 Oxygen
D SAR011 ozone
D SAR012 super oxide
C 0005 Sulphur
D SAR013... (3 Replies)
Discussion started by: Syeda Sumayya
3 Replies
5. Linux
I have a .CSV file (file.csv) whose data are all enclosed in double quotes. Sample format of the file is as below:
column1,column2,column3,column4,column5,column6, column7, Column8, Column9, Column10
"12","B000QRIGJ4","4432","string with quotes, and with a comma, and colon: in... (3 Replies)
Discussion started by: dhruuv369
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6. Shell Programming and Scripting
Hello, I am using awk to match text in a tab separated field and am able to do so when matching the exact word. My problem is that I would like to match any sequence of text in the tab-separated field without having to match it all. Any help will be appreciated. Please see the code below.
awk... (3 Replies)
Discussion started by: rocket_dog
3 Replies
7. Shell Programming and Scripting
Hello,
I have a text file with n lines in the following format (9 column fields):
Example:
contig00012 149606 G C 49 68 60 18 c$cccccacccccccccc^c
I need to count the number of lower-case and upper-case occurences in column 9, respectively, of the... (3 Replies)
Discussion started by: s052866
3 Replies
8. Shell Programming and Scripting
Hi,
Suppose if i am having a file with following records as given below.
5555
6756
5555
4555
4555
6767
how can i get the count of each record using AWK.
Eg:5555 count should be 2
4555 count should be 2
6767 count should be 1
... (5 Replies)
Discussion started by: tinivt
5 Replies
9. UNIX for Dummies Questions & Answers
Hi Guys,
I wanted to count the number of records for a particular field of a file. whose fields are separated by comma","
I fI use this command.
cat "filename" cut -sd "," -f13 | wc -l
This shows all the lines count including the blank values for the field number 13. I wanted to count... (2 Replies)
Discussion started by: Swapna173
2 Replies
10. UNIX for Dummies Questions & Answers
hi
i am new to shell and would like ask some question about shell
how am i suppose to count the number of fields with delementer example
a:b:c:d
would return me 4
how am i going to do it using shell??
what is the syntax for file locking?
thanks a lot (9 Replies)
Discussion started by: yang
9 Replies