9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
2. Shell Programming and Scripting
I have a directory /home/cmccabe/nfs/exportedReports that contains multiple folders in it. The find writes the name of each folder to out.txt. A new directory is then created in a new location /home/cmccabe/Desktop/NGS/API, named with the date. What I am trying to do, unsuccessfully at the moment,... (7 Replies)
Discussion started by: cmccabe
7 Replies
3. Shell Programming and Scripting
I am trying to make my script as simple as a possible but, I am not sure if the way I am approaching is necessarily the most efficient or effective it can be. What I am mainly trying to fix is a for loop to remove a string from the specified files and within this loop I am trying to copy the lines... (2 Replies)
Discussion started by: Allie_gastrator
2 Replies
4. Shell Programming and Scripting
Trying to download and extract a file to a specific folder, but getting an error. What am I doing wrong? Is there a way to rename the download if desired? Thank you :).
curl --url https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz | tar -xz --output... (4 Replies)
Discussion started by: cmccabe
4 Replies
5. Shell Programming and Scripting
I am attempting to download a url in csv format. When I download this url in a browser excel opens up and automatically populates with comma separated values.
When I try to use curl or wget I get nothing or garbage.
This on the command line just hangs
wget -b... (2 Replies)
Discussion started by: bash_in_my_head
2 Replies
6. Shell Programming and Scripting
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
Discussion started by: cmccabe
7 Replies
7. Shell Programming and Scripting
Hello,
I heva a problem creating a script that read specifc value from all the files of an entire folder
I have a number of email files into a directory and i need to extrect from each file 2 specific values.
After that i have to put them into a new file that looks like that:
To: value1
... (1 Reply)
Discussion started by: ahmenty
1 Replies
8. UNIX for Dummies Questions & Answers
Hi all.
I have 2 files like these:
file1
3 -2 5 4 . . .
3 3 3 4 . . .
2 2 3 4 . . .
3 -2 8 4 . . .
file2
0.4242 2 3 4 . . .
2.562 7 3 4 . . .
0.7242 5 5 4 . ... (3 Replies)
Discussion started by: t_studen_t
3 Replies
9. Shell Programming and Scripting
Hi,
This evening i would like to download multiple pcap captures files in the wireshark wiki sites. My aim is to download the capture files .pcap .cap and etc on the wireshark site SampleCaptures - The Wireshark Wiki. i already used wget, lynx, htget but still their problem downloading..it seems... (1 Reply)
Discussion started by: jao_madn
1 Replies