Chromosomal Bin Size Adjustment


 
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# 8  
Old 03-16-2016
How about
Code:
awk '{T = ($3 - $2)%base; N = $2; while (D < $3) {print $1, N, D = N + T, $4 "" ++C; N = D; T = base}}' base=10 file
chr1 100 105 name1
chr1 105 115 name2
chr1 115 125 name3
chr1 125 135 name4
chr1 135 145 name5
chr1 145 155 name6
chr1 155 165 name7
chr1 165 175 name8
chr1 175 185 name9
chr1 185 195 name10
chr1 195 205 name11
chr1 205 215 name12
chr1 215 225 name13

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RABBIT(1)							      rabbit								 RABBIT(1)

NAME
rabbit - presentation tool using RD, simple text format SYNOPSIS
rabbit [options] [SOURCE_INFOS] DESCRIPTION
Theme -I, --include=PATH Add [PATH] to load path. -t, --theme=THEME Use [THEME] as theme. (default) --comment-theme=THEME Use [THEME] for comment. () --allotted-time=TIME Use [TIME] as allotted time. () Source -T, --type=TYPE Specify source type as [TYPE]. Select from [auto, argf, file, memory, slideshare, uri]. Note: case insensitive. (auto) When select ARGF specify none (get from STDIN) or [FILE_NAMES] as [SOURCE_INFOS]. When select File specify [FILENAME] as [SOURCE_INFOS]. When select Memory specify [FILENAME_OR_NOT] as [SOURCE_INFOS]. When select SlideShare specify [USER] and [TITLE] as [SOURCE_INFOS]. When select URI specify URI as [SOURCE_INFOS]. -e, --encoding=ENCODING Specify source encoding as [ENCODING]. (auto) -B, --base=BASE Specify base URI or path of source as [BASE]. (auto) Initial state -f, --[no-]full-screen Toggle full screen mode. (off) --[no-]index-mode Toggle index mode. (off) Size -g, --geometry=GEOMETRY Set window geometry [GEOMETRY]. Format: WIDTHxHEIGHT+X+Y (nil) -w, --width=WIDTH Set window width to [WIDTH]. (800) -h, --height=HEIGHT Set window height to [HEIGHT]. (600) -S, --size=WIDTH,HEIGHT Set window width and height to [WIDTH] and [HEIGHT]. (800,600) Save -s, --save-as-image Save as image and exit. -i, --saved-image-type=TYPE Specify saved image type as [TYPE]. (png) -bBASE_NAME, Specify saved image base name as [BASE_NAME]. --saved-image-base-name (Title of slide) --saved-image-basename --[no-]output-html Output HTML for viewing saved images. (false) --[no-]output-index-html Output index HTML for navigating slides. (false) --rss-base-uri=URI Specify base URI of RSS as [URI]. RSS is generated only when HTML is output. () --source-filename=FILENAME Specify source filenam as [FILENAME]. () Print -p, --print Print and exit. -o, --output-filename=FILENAME Specify printed out filename as [FILENAME]. (#{Title of slide}.pdf) --slides-per-page=SLIDES Set slides per page. (1) --[no-]draw-scaled-image Draw scaled image. Better look for displaying but lesser look for printing. (true) Paper --paper-width=WIDTH Set paper width to [WIDTH] Pt. (landscape A4 width) --paper-height=HEIGHT Set paper height to [HEIGHT] Pt. (landscape A4 height) --paper-size=WIDTH,HEIGHT Set paper width and height to [WIDTH] Pt and [HEIGHT] Pt. (landscape A4 size) Margin --margin-left=MARGIN Set left margin for slides per page mode print. (auto) --margin-right=MARGIN Set right margin for slides per page mode print. (auto) --margin-top=MARGIN Set top margin for slides per page mode print. (auto) --margin-bottom=MARGIN Set bottom margin for slides per page mode print. (auto) --margin={ [ALL] | [TOP_BOTTOM],[LEFT_RIGHT] | [TOP],[LEFT_RIGHT],[BOTTOM] | [TOP],[RIGHT],[BOTTOM],[LEFT]} Set margin for slides per page mode print. --page-margin-left=MARGIN Set left page margin. (auto) --page-margin-right=MARGIN Set right page margin. (auto) --page-margin-top=MARGIN Set top page margin. (auto) --page-margin-bottom=MARGIN Set bottom page margin. (auto) --page-margin={[ALL]|[TOP_BOTTOM],[LEFT_RIGHT]|[TOP],[LEFT_RIGHT],[BOTTOM]|[TOP],[RIGHT],[BOTTOM],[LEFT]} Set page margin. dRuby --[no-]use-druby Specify whether to use dRuby. (true) --druby-uri=URI Specify dRuby URI. (druby://127.0.0.1:10101) --[no-]output-druby-uri Specify whether to output dRuby URI. (false) SOAP --[no-]use-soap Specify whether to use SOAP. (false) --soap-host=HOST Specify SOAP host as [HOST]. (0.0.0.0) --soap-port=PORT Specify SOAP port as [PORT]. (10103) XML-RPC --[no-]use-xmlrpc Specify whether to use XML-RPC. (false) --xmlrpc-host=HOST Specify XML-RPC host as [HOST]. (0.0.0.0) --xmlrpc-port=PORT Specify XML-RPC port as [PORT]. (10104) Server --[no-]server Specify whether to run as server. (false) Public level --public-level=LEVEL Specify public level. Select from the following: [ strict, move, read-size, change-size, size, read-source, change-source, source, control, all ] (all) Comment --comment-source=FILE Deprecated. Just ignored. Specify initial comment source. (default source) --comment-encoding=ENCODING Deprecated. Just ignored. Specify comment source encoding. (auto) Migemo --migemo-dictionary-search-path=PATH1,PATH2,... Specify search paths for Migemo static dictionary. (/usr/share, /usr/local/share) --migemo-dictionary-name=NAME Specify static dictionary name for Migemo. (migemo-dict) 3D --[no-]use-gl Specify whether to use OpenGL if available. (false) Display --[no-]keep-above Specify whether to keep above window. (false) Others --[no-]show-native-window-id Show a native window ID of the Rabbit window if available. e.g. The ID is the ID of X resource on X window system. (false) Common options --locale-dir=DIR Specify locale dir as [DIR]. (auto) --logger-type=TYPE Specify logger type as [TYPE]. Select from [stderr, gui]. (STDERR) --log-level=LEVEL Specify log level as [LEVEL]. Select from [debug, info, warning, error, fatal, unknown]. (info) --help Show this message. --version Show version. rabbit 1.0.7 June 2012 RABBIT(1)