User input and run awk using the input


 
Thread Tools Search this Thread
Top Forums Shell Programming and Scripting User input and run awk using the input
# 8  
Old 02-23-2016
Using the suggested code, If two genes are entered, say PTPN11,SCN1A. I can see them both on separate lines in GENE.txt, but there is a space after each newline in the file, so no calculation is done. Thank you Smilie

GENE.txt
Code:
PTPN11 
SCN1A

---------- Post updated at 04:54 PM ---------- Previous update was at 03:29 PM ----------

This seems to work:

Code:
printf "%s \n" "Please enter gene(s), use a comma between multiple:"
OLDIFS=$IFS
IFS=","
read -a genes
for (( i = 0; i < ${#genes[@]}; i++ ))
do
    printf "%s\n" "${genes[$i]}" >> /home/cmccabe/Desktop/panels/GENE.bed
done

removed IFS=$OLDIFS as well
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

awk command to search based on 5 user input fields

Field1=”” Field2=”” Field3=”” Field4=”” Field5=”” USER INPUT UP TO 5 FIELDS awk -F , '{ if ( $3 == Field1 && $6 == Field2 && $8 == Field3 && $9 == Field4 && $10 == Field5) print $0 }' /tmp/rodney.outD INPUT FILE (Rodney.outD): ... (3 Replies)
Discussion started by: rmerrird
3 Replies

2. Programming

Keyboard User Input in awk language ?

Hi, does someone know how to make a keyboard data input in the AWK programming language ? Regards Zabo (6 Replies)
Discussion started by: Zabo
6 Replies

3. Shell Programming and Scripting

Read input files and merge them in given order and write them to input one param or one file

Dear Friends, I am looking for a shell script to merge input files into one file .. here is my idea: 1st paramter would be outfile file (all input files content) read all input files and merge them to input param 1 ex: if I pass 6 file names to the script then 1st file name as output file... (4 Replies)
Discussion started by: hyd1234
4 Replies

4. Shell Programming and Scripting

Script to delete files with an input for directories and an input for path/file

Hello, I'm trying to figure out how best to approach this script, and I have very little experience, so I could use all the help I can get. :wall: I regularly need to delete files from many directories. A file with the same name may exist any number of times in different subdirectories.... (3 Replies)
Discussion started by: *ShadowCat*
3 Replies

5. Shell Programming and Scripting

Awk replacing file with user input

this section of the awk code i have here takes file to work with from the user. the user specifies the file name from the command line and the file name is assigned to the variable $FLIST awk 'BEGIN { while((getline < "'${FLIST}'")>0) S FS="\n"; RS="}\n" } now, i dont want... (5 Replies)
Discussion started by: SkySmart
5 Replies

6. Shell Programming and Scripting

How to get the user input recursively until the user provides valid input

Hi, echo "Enter file name of input file list along with absolute path : " read inputFileList if then for string in `cat inputFileList` do echo $string done else echo " file does not exist" fi From the above code, if the user enters a invalid file... (1 Reply)
Discussion started by: i.srini89
1 Replies

7. Shell Programming and Scripting

How to take input from user or awk script?

Hi Jim, I have following script,i which i need to take dynamic value . script, nawk -v v1=grep"INT_EUR" $propertifilename | cut -d"=" -F2` -F'~' '{if (NF-1 !=v1) {print "Error in " $0 " at line number "NR" tilde count " N-1}}' $filename In the above script i want to use INT_EUR as a variable... (2 Replies)
Discussion started by: Ganesh Khandare
2 Replies

8. Shell Programming and Scripting

Reading specific contents from 1 input files and appending it to another input file

Hi guys, I am new to AWK and unix scripting. Please see below my problem and let me know if anyone you can help. I have 2 input files (example given below) Input file 2 is a standard file (it will not change) and we have to get the name (second column after comma) from it and append it... (5 Replies)
Discussion started by: sksahu
5 Replies

9. Shell Programming and Scripting

AWK set FILENAME via user input

I am trying to write a awk script that prompts user for input to set the FILENAME varable. I can get it set, but I think awk is not doing anything with it. this is what I have so far #!/usr/bin/nawk -f BEGIN { FILENAME = "" printf "Enter name of file to check in : " ... (2 Replies)
Discussion started by: timj123
2 Replies

10. Shell Programming and Scripting

awk user input

Using the following I'm trying to print the user's response to the prompt Y / N but I get nothing other than the contents of $1? awk '{ printf($1 " ? (Y/N)") getline myresponse < "-" system("read myresponse") if (myresponse == "Y") { print $1... (17 Replies)
Discussion started by: gefa
17 Replies
Login or Register to Ask a Question
IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME
igawk - gawk with include files SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ... igawk [ all gawk options ] [ -- ] program-text file ... DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1). AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like @include getopt.awk in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path. OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports. EXAMPLES
cat << EOF > test.awk @include getopt.awk BEGIN { while (getopt(ARGC, ARGV, "am:q") != -1) ... } EOF igawk -f test.awk SEE ALSO
gawk(1) Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995. AUTHOR
Arnold Robbins (arnold@skeeve.com). Free Software Foundation Nov 3 1999 IGAWK(1)