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1. UNIX for Dummies Questions & Answers
Hi, I am trying to selectively merge two files based on keys reported in the 1st column.
File1:
#file1-header1
file1-header2
111 qwe rtz uio
198 asd fgh jkl
165 yxc
789 poi uzt rew
89 lkj
File2:
#file2-header2
file2-header2
165 ghz nko2 ... (2 Replies)
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Hi, I am trying to merge information across 2 files. The first file is a "master" file, with all IDS. File 2 contains a subset of IDs of those in File 1.
I would like to match up individuals in File 1 and File 2, and add information in File 2 to that of File 1 if they appear. However, if an... (3 Replies)
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Hi all,
I'm trying to join two .txt file tab delimitated based on a common column.
File 1
transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct
comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00
comp1000297_c0_seq1 ... (1 Reply)
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I have a problem joining two files. The first file abc.txt has 10k lines and has lots of fields but two fields fff1 and ppp1 to merge by. The second file xyz.txt is a master file with 1k lines and lots of fields but three fields to merge by fff1; rrr1 and qqq1.
The two files need to be merged... (9 Replies)
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Hi,
I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column).
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6. UNIX for Dummies Questions & Answers
file1:
Toronto:12439755:1076359:July 1, 1867:6
Quebec City:7560592:1542056:July 1, 1867:5
Halifax:938134:55284:July 1, 1867:4
Fredericton:751400:72908:July 1, 1867:3
Winnipeg:1170300:647797:July 15, 1870:7
Victoria:4168123:944735:July 20, 1871:10
Charlottetown:137900:5660:July 1, 1873:2... (2 Replies)
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7. Shell Programming and Scripting
Hi experts,
Would you please help me with this?
I have several files and I need to join the forth field of them based on the common first field.
here's an example...
first file:
280346 39.88 -75.08 547.8
280690 39.23 -74.83 538.7
280729 40.83 -75.08 499.2
280907 40.9 -74.4 507.8... (5 Replies)
Discussion started by: GoldenFire
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8. Shell Programming and Scripting
I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ?
file1
ax100 20 30 40
ax200 22 33 44
file2
ax100 10 20 40
ax200 12 13 44
file2
ax100 0 0 4
ax200 2 3 4 (9 Replies)
Discussion started by: quincyjones
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9. Shell Programming and Scripting
Hi All,
I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations:
1. I am restrained to 2 input files only.
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10. Shell Programming and Scripting
I'm new of UNIX shell scripting. I'm recently generating a excel report in UNIX(file with delimiter is fine). How should I make a script to do it?
1 file to join comes from output of one UNIX command, the second from another UNIX command, and third from a database query. The key columes of all... (7 Replies)
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csv(n) CSV processing csv(n)
NAME
csv - Procedures to handle CSV data.
SYNOPSIS
package require Tcl 8.3
package require csv ?0.3?
::csv::join values {sepChar ,}
::csv::joinlist values {sepChar ,}
::csv::read2matrix chan m {sepChar ,} {expand none}
::csv::read2queue chan q {sepChar ,}
::csv::report cmd matrix ?chan?
::csv::split line {sepChar ,}
::csv::split2matrix m line {sepChar ,} {expand none}
::csv::split2queue q line {sepChar ,}
::csv::writematrix m chan {sepChar ,}
::csv::writequeue q chan {sepChar ,}
DESCRIPTION
The csv package provides commands to manipulate information in CSV FORMAT (CSV = Comma Separated Values).
COMMANDS
The following commands are available:
::csv::join values {sepChar ,}
Takes a list of values and returns a string in CSV format containing these values. The separator character can be defined by the
caller, but this is optional. The default is ",".
::csv::joinlist values {sepChar ,}
Takes a list of lists of values and returns a string in CSV format containing these values. The separator character can be defined
by the caller, but this is optional. The default is ",". Each element of the outer list is considered a record, these are separated
by newlines in the result. The elements of each record are formatted as usual (via ::csv::join).
::csv::read2matrix chan m {sepChar ,} {expand none}
A wrapper around ::csv::split2matrix (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them
to the given matrix. For an explanation of the expand argument see ::csv::split2matrix.
::csv::read2queue chan q {sepChar ,}
A wrapper around ::csv::split2queue (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them
to the given queue.
::csv::report cmd matrix ?chan?
A report command which can be used by the matrix methods format 2string and format 2chan. For the latter this command delegates the
work to ::csv::writematrix. cmd is expected to be either printmatrix or printmatrix2channel. The channel argument, chan, has to be
present for the latter and must not be present for the first.
::csv::split line {sepChar ,}
converts a line in CSV format into a list of the values contained in the line. The character used to separate the values from each
other can be defined by the caller, via sepChar, but this is optional. The default is ",".
::csv::split2matrix m line {sepChar ,} {expand none}
The same as ::csv::split, but appends the resulting list as a new row to the matrix m, using the method add row. The expansion mode
specified via expand determines how the command handles a matrix with less columns than contained in line. The allowed modes are:
none This is the default mode. In this mode it is the responsibility of the caller to ensure that the matrix has enough columns to
contain the full line. If there are not enough columns the list of values is silently truncated at the end to fit.
empty In this mode the command expands an empty matrix to hold all columns of the specified line, but goes no further. The overall
effect is that the first of a series of lines determines the number of columns in the matrix and all following lines are
truncated to that size, as if mode none was set.
auto In this mode the command expands the matrix as needed to hold all columns contained in line. The overall effect is that after
adding a series of lines the matrix will have enough columns to hold all columns of the longest line encountered so far.
::csv::split2queue q line {sepChar ,}
The same as ::csv::split, but appending the resulting list as a single item to the queue q, using the method put.
::csv::writematrix m chan {sepChar ,}
A wrapper around ::csv::join taking all rows in the matrix m and writing them CSV formatted into the channel chan.
::csv::writequeue q chan {sepChar ,}
A wrapper around ::csv::join taking all items in the queue q (assumes that they are lists) and writing them CSV formatted into the
channel chan.
FORMAT
Each record of a csv file (comma-separated values, as exported e.g. by Excel) is a set of ASCII values separated by ",". For other lan-
guages it may be ";" however, although this is not important for this case (The functions provided here allow any separator character).
If a value contains itself the separator ",", then it (the value) is put between "".
If a value contains ", it is replaced by "".
EXAMPLE
The record
123,"123,521.2","Mary says ""Hello, I am Mary"""
is parsed as follows:
a) 123
b) 123,521.2
c) Mary says "Hello, I am Mary"
SEE ALSO
matrix, queue
KEYWORDS
csv, matrix, queue, package, tcllib
csv 0.3 csv(n)