10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Im having an issue when trying to replace the first column with a new set of values in multiple files. The results from the following code only replaces the files with the last set of values in val.txt. I want to replace all the files with all the values.
for date in {1..31}
do
for val in... (1 Reply)
Discussion started by: ncwxpanther
1 Replies
2. Shell Programming and Scripting
I have 4000 files like
$cat clus_grp_seq10_g.phy
18 1002
anig_OJJ65951_1 ATGGTTTCGCAGCGTGATAGAGAATTGTTTAGGGATGATATTCGCTCGCGAGGAACGAAGCTCAATGCTGCCGAGCGCGAGAGTCTGCTAAGGCCATATCTGCCAGATCCGTCTGACCTTCCACGCAGGCCACTTCAGCGGCGCAAGAAGGTTCCTCG
aver_OOF92921_1 ... (1 Reply)
Discussion started by: sammy777888
1 Replies
3. Shell Programming and Scripting
Hi forum,
Can you please help me understand how to look for and replace the below pattern (containing line breaks) and return a new result?
Rules: Must match the 3 line pattern and return a 1 line result.
I have found solutions with sed, but it seems that sed installed in my system is... (5 Replies)
Discussion started by: demmel
5 Replies
4. Shell Programming and Scripting
Hi,
I am trying to extract some patterns from a line. The input file is space delimited and i could not use column to get value after "IN" or "OUT" patterns as there could be multiple white spaces before the next digits that i need to print in the output file . I need to print 3 patterns in a... (3 Replies)
Discussion started by: redse171
3 Replies
5. Shell Programming and Scripting
Hi,
I need help to match pattern started with "RW" in file 1 and with pattern in $1 in file 2 as follows:-
File 1
BH /TOTAL=466(423); /POSITIVE=300(257); /UNKNOWN=25(25);
BH /F_P=141(141); /F_N=136; /P=4;
CC /TAX=!?; /MAX-R=2;
CC /VER=2;
RW P9610, AR_BSU , T; PAE25, AE_E57... (10 Replies)
Discussion started by: redse171
10 Replies
6. Shell Programming and Scripting
Hi,
i have input files like below:-
input1
Name Seq_ID NewID Scores
MT1 A0QZX3 1.65 277.4
IVO A0QZX3 1.65 244.5
HPO A0QZX3 1.65 240.5
RgP A0Q3PP 5.32 241.0
GX1 LPSZ3S 96.1 216.9
MEL LPSS3X 4.23 204.1
LDD LPSS3X 4.23 100.2
input2
Fac AddName NewID ... (9 Replies)
Discussion started by: redse171
9 Replies
7. Shell Programming and Scripting
Hi,
I need help to find matched patterns in 30 files residing in a folder simultaneously. All these files only contain 1 column. For example,
File1
Gr_1
st-e34ss-11dd
bt-wwd-fewq
pt-wq02-ddpk
pw-xsw17-aqpp
Gr_2
srq-wy09-yyd9
sqq-fdfs-ffs9
Gr_3
etas-qqa-dfw
ddw-ppls-qqw... (10 Replies)
Discussion started by: redse171
10 Replies
8. Shell Programming and Scripting
Hi,
I have a master file that i need to split into multiple files based on matched patterns. sample of my data as follows:-
scaff_1 a e 123 130 c_scaff_100
scaff_1 a e 132 138 c_scaff_101
scaff_1 a e 140 150 ... (2 Replies)
Discussion started by: redse171
2 Replies
9. Shell Programming and Scripting
Hi,
I have to write one script that has to search a list of numbers in certain zipped files.
For eg. one file file1.txt contains the numbers. File1.txt contains 5,00,000 numbers and I have to search each number in zipped files(The number of zipped files are around 1000 each file is 5 MB)
I have... (10 Replies)
Discussion started by: vsachan
10 Replies
10. UNIX for Dummies Questions & Answers
Hi guys,
say I have a few files in a directory (58 text files or somthing)
each one contains mulitple strings that I wish to replace with other strings
so in these 58 files I'm looking for say the following strings:
JAM (replace with BUTTER)
BREAD (replace with CRACKER)
SCOOP (replace... (19 Replies)
Discussion started by: rich@ardz
19 Replies