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1. UNIX for Beginners Questions & Answers
Dear Community;
I need to join two files but I am facing issues.
1st file has multiple columns. Primary (1st) columns has unique values. There are other columns out of which some has non-ascii characters as well (other language).
Example File below:
1-1001JRL,BiRecurring... (5 Replies)
Discussion started by: mystition
5 Replies
2. UNIX for Beginners Questions & Answers
Hi,
Sure it's an easy one, but it drives me insane.
input ("|" separated):
1|A,B,C,A
2|A,D,D
3|A,B,B
I would like to count the occurence of each capital letters in $2 across the entire file, knowing that duplicates in each record count as 1.
I am trying to get this output... (5 Replies)
Discussion started by: beca123456
5 Replies
3. Shell Programming and Scripting
In the awk below I am trying to match the value in $4 of file1 with the split value from $4 in file2. I store the value of $4 in file1 in A and the split value (using the _ for the split) in array. I then strore the value in $2 as min, the value in $3 as max, and the value in $1 as chr.
If A is... (6 Replies)
Discussion started by: cmccabe
6 Replies
4. UNIX for Beginners Questions & Answers
For some reason I am having difficulty performing what should be a fairly easy task. I would like to print lines of a file that have a unique value in the first field. For example, I have a large data-set with the following excerpt:
PS003,001 MZMWR/ L-DWD// *
PS003,001... (4 Replies)
Discussion started by: jvoot
4 Replies
5. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
6. Shell Programming and Scripting
I am trying to parse the input in awk to include the |gc= in $4 but am not able to. The below is close:
awk so far:
awk '{sub(/\|]+]++/, ""); print }' input.txt Input
chr1 955543 955763 AGRN-6|pr=2|gc=75 0 +
chr1 957571 957852 AGRN-7|pr=3|gc=61.2 0 +
chr1 970621 ... (7 Replies)
Discussion started by: cmccabe
7 Replies
7. Shell Programming and Scripting
I am trying to use awk to print the unique entries in $2
So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output.
File.txt
chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807... (5 Replies)
Discussion started by: cmccabe
5 Replies
8. Shell Programming and Scripting
Is it possible to print the records that has only 1 value in 2nd column.
Ex:
input
awex1 1
awex1 2
awex1 3
assww 1
ader34 1
ader34 2
output
assww 1 (5 Replies)
Discussion started by: quincyjones
5 Replies
9. Shell Programming and Scripting
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Discussion started by: rocket_dog
1 Replies
10. Shell Programming and Scripting
Hi, all
I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes.
sample input:
for this line, 5 fields are supposed to be extracted, they... (8 Replies)
Discussion started by: kevintse
8 Replies