awk to parse field and include the text of 1 pipe in field 4


 
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Old 11-07-2015
Quote:
Originally Posted by RudiC
How about
Code:
awk '{sub ("\|.*\|", "|")}1' file
chr1    955543  955763  AGRN-6|gc=75   0   + 
chr1    957571  957852  AGRN-7|gc=61.2 0   + 
chr1    970621  970740  AGRN-8|gc=57.1 0   +

?
Part of the requirement is to remove the 5th field.
Code:
awk '{sub (/\|.*\|/, "|", $4)}{print $1,$2,$3,$4,$6}' file
chr1 955543 955763 AGRN-6|gc=75 +
chr1 957571 957852 AGRN-7|gc=61.2 +
chr1 970621 970740 AGRN-8|gc=57.1 +
chr1 970621 970740 AGRN-8|gc=57.1 +


Last edited by Aia; 11-07-2015 at 08:47 PM..
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