Shell Programming and Scripting

 gjb2() {
    printf "\n\n"
    printf "What is the id of the patient getting GJB2 analysis : "; read id
	printf "Please enter the coding variant the following is an example"
	echo " c.274G>T"
	
    printf "variant(s), use a comma between multiple: "; IFS="," read -a variant
	        
        [ -z "$id" ] && printf "\n No ID supplied. Leaving match function." && sleep 2 && return
        [ "$id" = "end" ] && printf "\n Leaving match function." && sleep 2 && return

        for ((i=0; i<${#variant[@]}; i++))
              do printf "NM_004004.5:%s\n" ${variant[$i]} >> c:/Users/cmccabe/Desktop/Python27/out.txt
        done
	add2text ${id}.txt
	additional
}

nomenclature() {                 
 # run python NameChecker
    printf "\n\n"
	cd 'C:'
    C:/Users/cmccabe/Desktop/Python27/python.exe C:/Users/cmccabe/Desktop/Python27/run_batch_job.py C:/Users/cmccabe/Desktop/Python27/out.txt C:/Users/cmccabe/Desktop/Python27/out_name.txt NameChecker
   check
}