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1. Shell Programming and Scripting
Hello,
This is a bit complicated for me.
My scenario in MyFile:
Search string1,
When string1 is found, grep the line containing string1, go back over that line in upward direction and grep the first line containing string2.
Here is an example:
MyFile
His email address... (17 Replies)
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2. Shell Programming and Scripting
I need assistance with following requirement, I am new to Unix.
I want to do the following task but stuck with file creation date(sysdate)
Following is the requirement
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3. Shell Programming and Scripting
Hi Friends,
Please help me to sort out this problem, I am running this in centos o/s and whenever I run this script I am getting "find: missing argument to `-exec' " but when I run the same code in the command line I didn't find any problem. I am using perl script to run this ... (2 Replies)
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4. Shell Programming and Scripting
Hi all ,
I'm new to unix
I have a checked project , there exists a file called xxx.config .
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5. Linux
Hi,
I'm using the following command to find the multiple requierd file types and its working fine
find . -name "*.pl" -o -name "*.pm" -o -name "*.sql" -o -name "*.so" -o -name "*.sh" -o -name "*.java" -o -name "*.class" -o -name "*.jar" -o -name "*.gz" -o -name "*.Z" -type f
Though... (2 Replies)
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6. UNIX for Dummies Questions & Answers
I need to find whether there is a file named vijay is there or not in folder named "opt" .I tried "ls *|grep vijay" but it showed permission problem.
so i need to use find command (6 Replies)
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7. Shell Programming and Scripting
Yes , I have to find a file in unix without using any find or where commands.Any pointers for the same would be very helpful as i am beginner in shell scritping and need a solution for the same.
Thanks in advance.
Regards
Jatin Jain (10 Replies)
Discussion started by: jatin.jain
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8. Shell Programming and Scripting
Hello,
I create a file touch 1201093003 fichcomp
and inside a repertory (which hava a lot of files) I want to list all files created before this file :
find *.* \! -maxdepth 1 - newer fichcomp but this command returned bash: /usr/bin/find: Argument list too long
but i make a filter all... (1 Reply)
Discussion started by: yacsil
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BP_OLIGO_COUNT(1p) User Contributed Perl Documentation BP_OLIGO_COUNT(1p)
NAME
oligo_count - oligo count and frequency
SYNOPSIS
Usage: oligo_count [-h/--help] [-l/--length OLIGOLENGTH]
[-f/--format SEQFORMAT] [-i/--in/-s/--sequence SEQFILE]
[-o/--out OUTFILE]
DESCRIPTION
This scripts counts occurrence and frequency for all oligonucleotides of given length.
It can be used to determine what primers are useful for frequent priming of nucleic acid for random labeling.
Note that this script could be run by utilizing the compseq program which is part of EMBOSS.
OPTIONS
The default sequence format is fasta. If no outfile is given, the results will be printed to standard out. All other options can entered
interactively.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Charles C. Kim
Email cckim@stanford.edu
HISTORY
Written July 2, 2001
Submitted to bioperl scripts project 2001/08/06
>> 100 x speed optimization by Heikki Lehvaslaiho
perl v5.14.2 2012-03-02 BP_OLIGO_COUNT(1p)