10 More Discussions You Might Find Interesting
1. Programming
Dear linux users
I was running around of 200 djob for a Blastp search in a cluster. All my input files were protein fasta file (prot.fna.1, prot.fna.2 ...prot.fna.200). The output of each individual slurm job is located in a corresponding file ending with *test (prot.fna.1.test,... (10 Replies)
Discussion started by: Dieunel
10 Replies
2. UNIX for Dummies Questions & Answers
Hi, I'd like to loop an action over all files with given extension within a folder.
The "main" action is: awk -F "\t" 'BEGIN{OFS="\t"}{if ($10=="S") print$0; }' input.txt > output.txt
The input.txt should be every file in the folder with *.subVCF extension; and the output should be a file... (3 Replies)
Discussion started by: dovah
3 Replies
3. Shell Programming and Scripting
Hi all ,
i want to pass multiple files as input to a for loop
for i in file1 file2 file3
do
some awk action < $i >> $i.out
done
but im getting error in that for loop is the way i use to pass files to awk using for correct and
2.we can directly pass multiple files to awk as... (7 Replies)
Discussion started by: zozoo
7 Replies
4. Shell Programming and Scripting
( sleep 3
echo ${LOGIN}
sleep 2
echo ${PSWD}
sleep 2
while read line
do
echo "$line"
PID=$?
sleep 2
kill -9 $PID
done < temp
sleep 5
echo "exit" ) | telnet ${HOST}
while is executing only command and exits. (5 Replies)
Discussion started by: sooda
5 Replies
5. Shell Programming and Scripting
Hello all, I need to compute a row-wise average of files with a single column based on the pattern of the filenames. I really appreciate any help on this. it would just be very difficult to do them manually as the rows are mounting to 100,000 lines. the filenames are as below with convention as... (2 Replies)
Discussion started by: ida1215
2 Replies
6. Shell Programming and Scripting
I came across the command string on https://www.unix.com/shell-programming-scripting/141885-awk-removing-data-before-after-pattern.html which was what I was looking for to be able to remove data before a certain pattern. However, outputting the result to a file seems to work on an individual basis... (4 Replies)
Discussion started by: HLee1981
4 Replies
7. Shell Programming and Scripting
Hi,
I have a requirement where
I need to move Bunch of folders containing multiple files to another archive location.
i want to use mv command .I am thinking when we use mv command to move directory does it create directory 1st and then move all the files ?
e.g
source... (4 Replies)
Discussion started by: rkmbcbs
4 Replies
8. Shell Programming and Scripting
I'm trying some thing like this. But not working
It worked for bash files
Now I want some thing like that along with multiple input files by redirecting their outputs as inputs of next command like below
Could you guyz p0lz help me on this
#!/usr/bin/awk -f
BEGIN
{
}
script1a.awk... (2 Replies)
Discussion started by: repinementer
2 Replies
9. UNIX for Dummies Questions & Answers
Hi,
I have thousands of files in a directory that have the following 2 formats:
289620178.aln
289620179.aln
289620180.aln
289620183.aln
289620184.aln
289620185.aln
289620186.aln
289620187.aln
289620188.aln
289620189.aln
289620190.aln
289620192.aln....
and:
alnCDS_1.fasta (1 Reply)
Discussion started by: greptastic
1 Replies
10. Shell Programming and Scripting
Hi,
Can u see the code below.
set xyz = `cat testt1.txt | awk '/-----/{\
print $1 }\
' | tail -1`
I need to execute it in c shell . What is wrong with the above command.
When i write everything on a single line then it is working.
Can anybody help me . (0 Replies)
Discussion started by: nani_g
0 Replies