10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a file of ~500,000 entries in the following:
file.txt
chr1 11868 12227 ENSG00000223972.5 . + HAVANA exon . gene_id "ENSG00000223972.5"; transcript_id "ENST00000456328.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type... (17 Replies)
Discussion started by: cmccabe
17 Replies
2. UNIX for Advanced & Expert Users
Hello,
I am working parsing a large input file1(field CFA)
I have to compare the the file1 field(CFA byte 88-96) with the content of the file2(It contains only one field) and and insert rows equal
in another file.
Here is my code and sample input file:
... (7 Replies)
Discussion started by: GERMANOS
7 Replies
3. Shell Programming and Scripting
I have a special case that awk could be used but I do not have the skill. Trying to create a final output file (indel_parse.txt) that is created from using some information from each of the two files (attached).
parse rules:
The header is skipped FNR>1
1. 4 zeros after the NC_ (not... (2 Replies)
Discussion started by: cmccabe
2 Replies
4. Shell Programming and Scripting
Hi Unix gurus..
I have a file which has below data, It has several MQ Queue statistics;
QueueName= 'TEST1'
CreateDate= '2009-10-30'
CreateTime= '13.45.40'
QueueType= Predefined
QueueDefinitionType= Local
QMinDepth= 0
QMaxDepth= 0
QueueName= 'TEST2'
CreateDate= '2009-10-30'... (6 Replies)
Discussion started by: dd_psg
6 Replies
5. Shell Programming and Scripting
Hello,
I have a log file , i want to delete the lines of the log file which is match with 1st and 5th field with different patterns. Once it will meet with that condition it will delete that line from the log . I dont want to create any temp file over there.
Successfully able to retrieve the... (1 Reply)
Discussion started by: posix
1 Replies
6. Shell Programming and Scripting
Hi,
I want to split/parse certain bits of the hex data into another field.
Example:
Input data is
Word1: 4f72abfd
Output:
Parse bits (5 to 0) into field word1data1=0x00cd=205 decimal
Parse bits (7 to 6) into field word1data2=0x000c=12 decimal
etc.
Word2: efff3d02
Parse bits (13 to... (1 Reply)
Discussion started by: morrbie
1 Replies
7. Shell Programming and Scripting
When parsing multiple fields in a file using AWK, how do you group by one of the fields and parse by delimiters?
to clarify
If a file had
tom | 223-2222-4444 , randofield
ivan | 123-2422-4444 , random filed
... | and , are the delimiters ...
How would you group by the social security... (4 Replies)
Discussion started by: Josef_Stalin
4 Replies
8. Shell Programming and Scripting
Hi everyone,
I'm trying to use the "join" function for more than 1 field. Since it's not possible as it is, I want to take my input files and concatenate the joining fields as 1 field (separated by "|"). I wrote 2 awk script to do and undo it (see below). However I'm new to awk and I'm certain I... (5 Replies)
Discussion started by: anthony.cros
5 Replies
9. Shell Programming and Scripting
I have a file name version.properties with the following data:
major.version=14
minor.version=234
I'm trying to write a grep expression to only put "14" to stdout. The following is not working.
grep "major.version=(+)" version.properties
What am I doing wrong? (6 Replies)
Discussion started by: obfunkhouser
6 Replies
10. Shell Programming and Scripting
suppose if u have a file like that
Hen ABCCSGSGSGJJJJK 15
Cock ABCCSGGGSGIJJJL 15
* * * * * * : * * * . * * * :
Hen CFCDFCSDFCDERTF 30
Cock CHCDFCSDHCDEGFI 30
* . * * * * * * * : * * :* : : .
The output shud be
where there is : and .
It shud... (4 Replies)
Discussion started by: cdfd123
4 Replies