Output calculations


 
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Old 06-23-2015
Your function ar() {function code} is not called.
Either change the function pr() {function code},
or change the other code to call the ar() instead of the pr().
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avg_adm(1)					       The Computational Morphometry Toolkit						avg_adm(1)

NAME
avg_adm - Average using ADM SYNOPSIS
avg_adm [options] list0 [list1 ...] DESCRIPTION
Compute average-shape average-intensity images and deformation maps using an active deformation model. OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --label, -l Label mode (as opposed to grey) --set-padding <float> Set padding value in input files [Default: disabled] --replace-padding <float> Replace padding value in input files [Default: disabled] --pad-out <double>, -p <double> Padding value for output file [Default: disabled] --jacobian, -j Average Jacobian determinants of deformations. --auto-scale, -a Auto-scale image intensities --char Output is 8 bits, signed [default: automatic] --byte Output is 8 bits, unsigned --short Output is 16 bits, signed --ushort Output is 16 bits, unsigned --int Output is 32 bits signed --float Output is 32 bits floating point --double Output is 64 bits floating point --no-scale-model, -S Exclude scale from statistical deformation model --no-ref-model, -R Exclude reference coordinate frame from deformation model --no-ref-data, -r Exclude reference data from averaging --output <string>, -o <string> Output file name [FORMAT:]path [Default: NONE] --input-warp <string>, -I <string> Input file name for average warp [Default: NONE] --output-warp <string>, -O <string> Output file name for average warp [Default: NONE] --with-affine, -A Include affine component of first warp in output --nn Use nearest neigbor interpolation --cubic Use tri-cubic interpolation --replace-from <string> Replace from pattern --replace-to <string> Replace to pattern AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 avg_adm(1)