to keep the html tags but make the file a text that can be parsed.
In each of the 97 txt files the gene # is variable, but the gene is associated or should have a corresponding OMIM #. They are all in,
Is there a way to search the source code for these gene names and OMIM #’s?
For example, in the attached file there are 26 genes:
Output (tab-delimited)
The gene names seem to be after
and the OMIM # seem to be
I think
can parse html but I am not familiar enough to know how to code it for multiple files in a directory.
Looks like it suppressed all "\" in the input file path. Try to escape or quote.
You did not specify any wildcard, so it would work on file "parse" only. Is this what you want? Or is "parse" a directory?
Hi all
I have written some code to write my output in html.
As i have multiple servers, need to generate single html file. but my code is generating html file for each server.
I have merged the files using below code.
cat /home/*_FinalData.html > /home/MergedFinalData.html
But how to... (1 Reply)
Hello:
I am working parsing a large input file which will be broken down into multiples based on the second field in the file, in this case: STORE.
The idea is to create each file with the corresponding store number, for example: Report_$STORENUM_$DATETIMESTAMP , and obtaining the... (7 Replies)
I downloaded source code using:
wget -qO- http://fulgentdiagnostics.com/test/clinical-exome/ | cat > flugentsource.txt
Now I am trying to use sed to parse it to confirm a gene count. Basically, output (flugent.txt) all the gene names with a total count after them
I'm not all that... (5 Replies)
Hi all:
Been racking my brain on this for the last couple of days and what has been most frustrating is that this is the last piece I need to complete a project.
There are numerous posts discussing mutt in this forum and others but I have been unable to find similar issues.
Running with... (1 Reply)
Hi..Can anyone suggest a simple way of achieving this. I have several files which ends with extension .vcf . I will give example with two files
In the below files, we are interested in
File 1:
38 107 C 3 T 6 C/T
38 241 C 4 T 5 C/T
38 247 T 4 C 5 T/C
38 259 T 3 C 6 T/C... (8 Replies)
I have two files
File 1 in reading directory is of following format
Read 1 A T
Read 3 T C
Read 5 G T
Read 7 A G
Read 10 A G
Read 12 C G
File 2 in directory contains
Read 5 A G
Read 6 T C
Read 7 G A
Read 8 G A
Read 20 A T
File2 contains (1 Reply)
Hello,
I just saw that on my vps (centOS) my oscommerce with a seo script
has created millions of tmp files inside the /html/cache/ directory.
I would need to remove all those files (millions), I tried via shell but the vps
loads goes to very high and it hangs, is there some way to do a... (7 Replies)
Hello,
I have a html file like this :
<html>
...
...
...
<table>
.......
......
</table>
<table name = "hi">
......
.....
...
</table>
<h1> Welcome </h1>
.......
......
</html> (11 Replies)
hi all,
i need to capture all the files in a directory and its subdirectories that have owner name different than the root owner.
for one file it is " stat -c %U filename " but i need to search for each and every file and record it.
thanks in advance (14 Replies)
I'm trying to upgrade a whole bunch of pages on my site to a new design.
I thought one way of doing it would be to enclose the content in special comment tags and then use some form of script to wrap the new html around it. Like this:
<!-- content start -->
<h1>Blah blah blah</h1>
yada yada... (9 Replies)