10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to use awk to match the NM_ in file with $1 of id which is tab-delimited. The NM_ will always be in the line of file that starts with > and be after the second _. When there is a match between each NM_ and id, then the value of $2 in id is substituted or used to update the NM_. Each NM_... (3 Replies)
Discussion started by: cmccabe
3 Replies
2. Shell Programming and Scripting
Trying to use awk to add a . to $4. The input and output is tab-delimeted, but the awk seems to add a . in front of $5 and is space-delimeted. It seems close, but I am not able to produce the desired output. Thank you :).
file
chr1 948895 949015 chr1:948895-949015 ISG15
chr1 ... (1 Reply)
Discussion started by: cmccabe
1 Replies
3. Shell Programming and Scripting
I have tab delimited input that prints out in the format below:
I am trying to add field headers to $5 and $6. Not sure if sed is the best tool but my attempt is below. Thank you :).
$5 = REF
$6 = ALT
file
ID CHR START STOP
123 1 100 200 A ... (6 Replies)
Discussion started by: cmccabe
6 Replies
4. Shell Programming and Scripting
I am trying to add a condition to the below perl that will capture the GTtag and place a specific string in the last field of each line. The problem is that the GT value used is not right after the tag rather it is a few fields away. The values should always be 0/1 or 1/2 and are in bold in the... (12 Replies)
Discussion started by: cmccabe
12 Replies
5. Shell Programming and Scripting
I am trying to add a tab after the last digit in $3 in the input. The grep below is all I can think off. Thank you :)
sed -n 's/:/&/p' input
input
chr1 955542 955763AGRN-6|gc=75
chr1 957570 957852AGRN-7|gc=61.2
chr1 976034 976270AGRN-9|gc=74.5
desired output
chr1... (5 Replies)
Discussion started by: cmccabe
5 Replies
6. Shell Programming and Scripting
Hello,
i need help with awk.
I have this file:
cat number
DirB port 67 er_enc_out 0 er_bad_os 0
DirB port 71 er_enc_out 56 er_bad_os 0
DirB port 74 er_enc_out 0 er_bad_os 0
DirB port 75 ... (4 Replies)
Discussion started by: elilmal
4 Replies
7. Shell Programming and Scripting
i have this file
073274753,0544901701,20101201,000316
038873722,69647455,20101130,235257
26213399,0545335767,20101201,000930
063330167,0566000101,20101201,000226
026773376,11966,20101130,234429,1194
075431120,0565900600,20101201,000428
75431120,0565900600,20101201,000538... (6 Replies)
Discussion started by: maxim42
6 Replies
8. Shell Programming and Scripting
I'm trying to update a text file via sed/awk, after a lot of searching I still can't find a code snippet that I can get to work.
Brief overview:
I have user input a line to a variable, I then find a specific value in this line 10th field in this case. After asking for new input and doing some... (14 Replies)
Discussion started by: crownedzero
14 Replies
9. Shell Programming and Scripting
Say the input was as follows:
Brat 20 x 1000 32rf
Pour 15 p 1621 05pr
Dart 10 z 1111 22xx
My program prompts for an input, what I want is to use the input to locate a specific field. Like if I type in, "Pou" then it would return "Pour" and just "Pour"
I currently have this line but it is... (6 Replies)
Discussion started by: Bungkai
6 Replies
10. Shell Programming and Scripting
Hi Everyone,
a.txt
a b c 1 e e e e e
a b c 2 e e e e e
the output is
a b c 1 e e e e e
a 00b c 2 e e e e e
when 4th field = '2', then add '00' in the front of 2nd field value.
Thanks (9 Replies)
Discussion started by: jimmy_y
9 Replies